Danio rerio (zebrafish): 556995
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Entry
556995 CDS
T01004
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
dre
Danio rerio (zebrafish)
Pathway
dre03030
DNA replication
dre03410
Base excision repair
dre03420
Nucleotide excision repair
dre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
556995 (lig1)
03410 Base excision repair
556995 (lig1)
03420 Nucleotide excision repair
556995 (lig1)
03430 Mismatch repair
556995 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
dre03032
]
556995 (lig1)
03400 DNA repair and recombination proteins [BR:
dre03400
]
556995 (lig1)
Enzymes [BR:
dre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
556995 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
556995 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
556995 (lig1)
DNA replication proteins [BR:
dre03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
556995 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
556995 (lig1)
DNA repair and recombination proteins [BR:
dre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
556995 (lig1)
NER (nucleotide excision repair)
Other NER factors
556995 (lig1)
MMR (mismatch excision repair)
Other MMR factors
556995 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
556995
NCBI-ProteinID:
NP_001119860
ZFIN:
ZDB-GENE-110404-2
Ensembl:
ENSDARG00000060041
UniProt:
B0S533
LinkDB
All DBs
Position
2:complement(44301475..44344136)
Genome browser
AA seq
1058 aa
AA seq
DB search
MQRSIASFFQPMKGKEKSDGQAKGKPGPVKSPLKIQNGVQESDSPIKKVHKRSRAILDSD
EEDGDQPMVKEQEPKQSEVQTVKKEKISDVKTAEVTKASSTPVSPKSPKTPTTPVTSSTS
VSVVTPASSGTPGTPATPTSVSPSGIPKRKTARKQFPKRKLESRSDGEELKEEEKEVDGG
QESKRARVDSSPEQTENEMMEVDETSADEKTAVEEKEDKAKTSVVVDSEMKDEDDKKQKI
NTNNEAKEKDKNESKQEEKIDTEKETKEKDKKINKQQEKKETKKETKEKDKSDKKQEEKD
KSDKKQEEKDKTEEKVNGENEKEKIPDKKGKESSSPEKVVKKEKDTDGGSAKKKPISSFF
APRKAAVKLEKEERNEGEKKKDGETSDVVEQKEKKSEKGVDSAVQSQYDPSRAHYHPIDH
ACWKKGQKVPYLAVARTFEKIEEDSGRLKNIETLSNFLRSVILLSPDDLLCCVYLCLNQL
GPAYQGLELGIGETVLMKAVAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRMMFAPAN
LTAGGVFNKLKEIAHMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQS
VLAALSQAVCLTPPGQEFPPAVLDAGKGMSTENRRVFLEEKALILKQTYCEMPNYDAIIP
VLLKEGIDELPNHCKLTPGVPLRPMLAHPTKGVGEVMKRFDEASFTCEYKYDGERAQIHI
LENGEVRIFSRNQEDNTSKYPDIISRIPQVKKESVRSCVLDSEAVAWDREKKQIQPFQVL
TTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVREPLSKRRALLRESFVEKEGEFVFARS
LDADNTETIAEFLEQSVRDSCEGLMVKTLEKHATYEIAKRSHNWLKLKKDYLEGVGDTVD
LCVIGAYLGKGKRAGGYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILP
KPRPYYRVDQSAEPDVWLEAVQVWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRFLRI
RDDKKPEDATTGSQIADLYKKQQQIQNQGDKPDLEDYY
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatagcgtctttctttcagccaatgaaaggcaaggagaagagtgatgga
caggccaagggaaagccaggaccagtaaaaagtcctcttaaaattcagaatggcgtgcag
gaaagtgattcgccaataaagaaggttcataaacgcagtcgagcaatcctagacagcgat
gaagaagatggagatcagccaatggtcaaggagcaggagccaaaacagagtgaagttcaa
acagtaaagaaagagaagatttctgatgttaagacggctgaggtaacaaaggcttcctct
actcctgtatctccaaaatcccccaaaaccccaacgactccggtcacttcgagcacctct
gtttctgttgtaactcctgcgtcctctgggactcctggaactccagcaactccaacatca
gtgtcaccgtcaggcattcccaaacgcaagactgctcgtaagcagttccctaagaggaag
ctggaaagcaggagtgatggagaagaactaaaagaggaagagaaggaggtcgatggagga
caggagagtaagagagcacgagtcgactcttcaccagaacagacagagaatgagatgatg
gaggtggacgagacgagtgctgatgaaaagactgcagttgaggagaaagaggacaaggcg
aaaactagtgtagttgtggacagcgagatgaaagatgaagatgacaagaagcagaagata
aatacaaacaacgaggcaaaagagaaggataaaaatgagagtaagcaagaggagaagata
gatacagaaaaggagacgaaagaaaaggataaaaagatcaataagcagcaggaaaagaaa
gaaacaaaaaaggagacaaaagaaaaggataaaagtgacaaaaagcaggaggaaaaagat
aaaagtgacaaaaagcaggaggaaaaggataaaactgaggaaaaagtaaatggtgagaat
gaaaaggagaaaataccggacaagaaaggaaaagaaagcagcagtcctgaaaaagtggtg
aaaaaagagaaggacacagacggaggatctgccaaaaagaaacccatcagcagctttttt
gcacccagaaaggctgcagttaaactggaaaaagaagagcgaaatgaaggagagaaaaag
aaagatggagagacctctgatgtggtggaacagaaagagaagaaaagtgaaaagggagtg
gattctgcagtccagagccaatatgatccttctagagcacattatcatcccattgaccac
gcctgctggaagaagggtcaaaaagtgccatatttggctgttgctcgcacctttgagaaa
attgaagaggattctggaaggctaaaaaatattgaaactctttccaactttctgcgctct
gtaattctgctatctccagatgacctgctgtgttgtgtgtacctgtgtctgaatcagctg
ggccctgcgtatcagggtctggagttgggcatcggggagacggtacttatgaaagccgtc
gctcaagcaaccgggcgacaactagacaaaatcaaggcggaggctcaggagaaaggagac
ctgggattggttgctgaaagttcccgcagtaaccagagaatgatgtttgcaccggctaat
ctgacagcagggggtgttttcaacaaactgaaggagattgctcacatgagtggaaactcg
gcaatgaataagaagattgacattattaaaggcctttttgtggcgtgtcggttttctgag
gcccgatacattgtgcggtcgttggcggggaagttgcggatcggattggctgagcagagt
gttcttgcagctctcagtcaggctgtgtgtctgacgcctccaggccaagagttcccacca
gctgtgttggatgcaggaaaaggaatgagtacagaaaacaggagagtattcctagaggag
aaagcactaatcctgaaacagacatattgtgagatgccaaattatgatgcaatcattcct
gtattgctgaaggaggggattgatgaactgcccaatcactgcaagctcactccaggggtt
cctctgcgacccatgttggctcatccgactaaaggggttggtgaggtaatgaaacgtttc
gatgaagcctccttcacctgcgagtacaaatatgatggagagagagcccagatccatatt
cttgagaacggagaggtgcgcattttcagcagaaaccaagaggacaacacgagcaaatac
cctgatattatctcacgaatcccacaggtgaagaaagagagcgtacggtcctgtgttctg
gattcagaggcagtggcttgggacagagaaaagaaacaaatccagccgtttcaggtcctc
accacaagaaagaggaaggatgtggatgcatctgagatcaaggttcaggtgtgtgtgtac
gccttcgacctgctgtacctcaatggagagtctctggtgcgagagcctctaagcaaacgc
agggctttgttacgagagagttttgtggagaaagaaggagagtttgtttttgctcgatct
ctggatgctgacaatacagaaaccatcgctgagttcctggagcagtctgtacgagattct
tgtgaaggcctaatggtgaaaacattggaaaagcatgcaacttatgagattgccaaacgc
tcccacaattggctcaagctgaaaaaggactatctggagggtgttggagacaccgtggat
ctgtgtgtgattggtgcatatctgggcaaggggaagagagcaggcggctatggaggattt
ctgctggcctgctatgatgaagagaacgaggaattccagtctgtttgcaagattggaaca
ggattcaaagacgaagatctggagcagcattacaacttcttaaaggagcacattttaccc
aaaccccgcccgtactaccgtgtagaccaatcagcagagccggatgtatggctggaggcg
gtgcaggtgtgggaggtgaaatgcgctgacctttccctgtctccagtctacaaagcagcc
atgggattggtggacccagagaaaggcatttccctccgtttcccacgattcctcaggatc
agagatgacaaaaagccagaggatgccaccacagggtcgcagattgctgatctctacaag
aaacagcagcagattcaaaatcagggtgacaaaccagatttggaggactactattga
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