KEGG   Danio rerio (zebrafish): 565482Help
Entry
565482            CDS       T01004                                 

Gene name
hdac6
Definition
(RefSeq) histone deacetylase 6
  KO
K11407  
histone deacetylase 6 [EC:3.5.1.98]
Organism
dre  Danio rerio (zebrafish)
Brite
Enzymes [BR:dre01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     565482 (hdac6)
Protein phosphatases and associated proteins [BR:dre01009]
 Protein Ser/ Thr phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     565482 (hdac6)
Messenger RNA biogenesis [BR:dre03019]
 Eukaryotic Type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     565482 (hdac6)
Membrane trafficking [BR:dre04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    565482 (hdac6)
Chromosome [BR:dre03036]
 Eukaryotic Type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     565482 (hdac6)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif Motif
Other DBs
NCBI-GeneID: 
NCBI-ProteinID: 
ZFIN: 
Ensembl: 
Vega: 
LinkDB All DBs
Structure
PDB: 

Jmol
Position
8
AA seq 1081 aa AA seqDB search
MDAVPDTKGSSGPPRGTPETKNNKKNLQEARRKGRMDRSKAEEEMSNELQNLDVQGKSKA
TGTGLVYVDAFTRFHCLWDASHPECPARVSTVMEMLETEGLLGRCVQVEARAVTEDELLL
VHTKEYVELMKSTQNMTEEELKTLAEKYDSVYLHPGFFSSACLSVGSVLQLVDKVMTSQL
RNGFSINRPPGHHAQADKMNGFCMFNNLAIAARYAQKRHRVQRVLIVDWDVHHGQGIQYI
FEEDPSVLYFSVHRYEDGSFWPHLKESDSSSVGSGAGQGYNINLPWNKVGMESGDYITAF
QQLLLPVAYEFQPQLVLVAAGFDAVIGDPKGGMQVSPECFSILTHMLKGVAQGRLVLALE
GGYNLQSTAEGVCASMRSLLGDPCPHLPSSGAPCESALKSISKTISDLYPFWKSLQTFEG
GPLSEVSPLPAPVCAEVKVSSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEEL
RLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYT
CALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSIT
RESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGR
GYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPE
GYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSAT
VSINNVLRAHAPFWSSLRVNIPESLRLSLPSPKPKGKCTPGGKGKKSPRQSTPSQSPGQA
THRPDQSGFDELTADLLSLNLNTSTSSNTSPESVAVGGARRKVKPNTHRVSAGLESESPL
KLNPEKAGAGDDTDVKAETPNRSISEPVVTCDSSAVKDQESLVLEAAGGNTVQSVLERVF
GAQATDVDTMYVVDPLPWCPHLESVRPVPAGGIDVFQPCEECGGEAENWICLFCYKVLCG
RYVNQHMVTHGQESGHPVVLSFADLSVWCYACESYVHNKVLHEAKNAAHLVKFGEGIHPF
N
NT seq 3246 nt NT seq  +upstreamnt  +downstreamnt
atggatgcggttccagataccaaaggttcttcaggacctccgagaggaacgccagaaaca
aaaaacaataagaagaatctacaagaggccaggagaaaaggcagaatggatcggagcaaa
gctgaagaggagatgagcaatgaactgcaaaatctggatgttcaaggaaagagcaaagcg
acaggaacaggtcttgtatatgtagacgccttcactcgctttcactgcctctgggatgcc
agtcatccagagtgtccagcgagagtgagcacggtaatggagatgctggagactgagggt
ctgctgggacgctgtgtacaagtggaggctagagctgtgacagaagatgagctgctactc
gtgcacacgaaagagtatgtagaactgatgaaatccacacagaacatgacagaggaagaa
ctgaagactcttgctgagaaatatgactcggtttacctgcatcctgggtttttcagctcc
gcctgtctgtcagtgggatcagttctccagctggtggataaggtgatgacatcacagctg
cgtaatggcttctccatcaacaggcctccaggtcaccatgctcaggcagataagatgaac
ggcttctgtatgtttaataatctggccatagcagcacgatatgctcagaaacgacacagg
gttcaacgagttttaattgtggactgggatgtgcatcacggacagggaatccagtatatt
tttgaagaggatcccagtgtgctgtatttctcagtgcacagatatgaagacggctcattc
tggccccatctaaaggagtctgacagcagttcggttggctcaggagcaggacaaggctat
aatatcaacctgccctggaacaaggtggggatggaaagtggagattacatcacagctttc
cagcagcttctcctgcctgtggcatacgagtttcagcctcaactggtgttagtggccgct
ggatttgacgctgtgatcggtgacccaaagggcgggatgcaagtgagtcctgagtgtttc
tccattctgacacacatgctgaaaggtgttgcacagggaaggcttgtgctggctttagag
ggtgggtataacctgcagtccacagcggagggtgtttgcgctagtatgaggtctcttctg
ggtgacccctgccctcacctgccctcttctggcgctccctgtgaaagtgccttgaagtca
atctcaaagaccatctcagacttgtatccattttggaagagtcttcaaacttttgaaggt
ggtcctctgtctgaagtctcccccctgcccgctccagtatgtgcagaagtgaaggtttct
tctccgatcactgggctagtttatgaccagagaatgatgcttcatcacaacatgtgggac
agtcatcatccagagctccctcagagaatttcacgaatcttctcccgccatgaggagttg
cgcctgctgtcccgttgtcatcggataccagctcgcctagcaacagaagaggagctggcg
ctctgtcacagttccaagcatataagcatcattaagagttcagagcacatgaaacccaga
gatctaaaccgactgggggacgaatacaactccattttcatcagcaatgagagctacact
tgtgccctgctggctgctggctcgtgctttaattctgcacaggccatactcacaggccag
gtgagaaacgctgtggctatagtccgtcctccgggtcatcatgctgagaaagacacagct
tgtgggttctgtttctttaacacagccgctttgactgcacgctatgcccagagcatcacg
cgtgaatctctgcgcgtcctcattgtcgactgggacgttcaccatggaaacggcacacag
cacatcttcgaggaggatgacagtgttctgtacatctccctgcatcgctacgaagatggg
gcattcttcccaaactcagaggatgctaactatgataaggtgggactggggaaaggcaga
ggatacaacgtcaacatcccctggaacggagggaaaatgggagacccagaatacatggcg
gctttccatcacttagtgatgcccatagcaagagagtttgccccagagctggtgctggtc
tctgctgggtttgatgcagcacgaggtgatccgttaggagggtttcaggtgaccccggag
ggctatgctcacctcacccatcagctaatgagtctggctgcaggaagagtgcttatcatt
ctggagggtggttataacctcacttccatctcggagtccatgtccatgtgcaccagtatg
ttgttgggagactctccgccttctctagaccacctgacccctctgaagaccagcgccact
gtcagtattaataatgtcctgcgtgctcacgcccccttctggagctctcttagagtcaac
attccagaatctcttcgtttgtctctaccttcacctaaaccaaaaggcaaatgtacaccg
ggggggaagggtaagaagtctcctcgccaatccaccccttctcagagtcccggacaggca
acacatcgtcccgaccaatccggcttcgatgagctcactgcggatctgctttctctgaat
ctcaacaccagcacctcatctaacaccagcccagagtcagtcgctgttggaggagccagg
cggaaggtgaaacccaacacacacagagtttcagcaggcctggagtcagaatcaccccta
aaactcaaccctgagaaagccggagctggagacgacacagatgtaaaagcagagacacct
aaccgttcgatctcagagcctgtggtcacctgtgattcatcagccgtgaaggatcaggag
agtttagttctggaggctgctggaggaaacactgtgcagtcagtcttagagcgcgtcttt
ggagcacaagccaccgatgtggacactatgtatgtggtggatccgttgccatggtgccca
cacttggagtcagtgcgaccggtgcctgcaggagggattgatgtctttcagccgtgtgaa
gagtgtggaggtgaagcggaaaactggatctgcctcttctgctataaggtgctttgcggg
cgttatgtgaaccagcacatggtgacccacgggcaggagtctgggcatcctgttgtgctt
agctttgctgacctttctgtgtggtgttacgcttgtgaatcatacgtccataacaaggtt
ctgcatgaagccaaaaatgctgctcatcttgtgaagtttggagaggggattcatcctttc
aactaa

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