Danio rerio (zebrafish): 565482
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Entry
565482 CDS
T01004
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
dre01009
]
565482 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dre03019
]
565482 (hdac6)
04131 Membrane trafficking [BR:
dre04131
]
565482 (hdac6)
03036 Chromosome and associated proteins [BR:
dre03036
]
565482 (hdac6)
Enzymes [BR:
dre01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
565482 (hdac6)
Protein phosphatases and associated proteins [BR:
dre01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
565482 (hdac6)
Messenger RNA biogenesis [BR:
dre03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
565482 (hdac6)
Membrane trafficking [BR:
dre04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
565482 (hdac6)
Chromosome and associated proteins [BR:
dre03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
565482 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
565482
NCBI-ProteinID:
XP_009302026
ZFIN:
ZDB-GENE-030131-3232
Ensembl:
ENSDARG00000008384
UniProt:
F8W4B7
Structure
PDB
LinkDB
All DBs
Position
8:complement(7393435..7444482)
Genome browser
AA seq
1081 aa
AA seq
DB search
MDAVPDTKGSSGPPRGTPETKNNKKNLQEARRKGRMDRSKAEEEMSNELQNLDVQGKSKA
TGTGLVYVDAFTRFHCLWDASHPECPARVSTVMEMLETEGLLGRCVQVEARAVTEDELLL
VHTKEYVELMKSTQNMTEEELKTLAEKYDSVYLHPGFFSSACLSVGSVLQLVDKVMTSQL
RNGFSINRPPGHHAQADKMNGFCMFNNLAIAARYAQKRHRVQRVLIVDWDVHHGQGIQYI
FEEDPSVLYFSVHRYEDGSFWPHLKESDSSSVGSGAGQGYNINLPWNKVGMESGDYITAF
QQLLLPVAYEFQPQLVLVAAGFDAVIGDPKGGMQVSPECFSILTHMLKGVAQGRLVLALE
GGYNLQSTAEGVCASMRSLLGDPCPHLPSSGAPCESALKSISKTISDLYPFWKSLQTFEG
GPLSEVSPLPAPVCAEVKVSSPITGLVYDQRMMLHHNMWDSHHPELPQRISRIFSRHEEL
RLLSRCHRIPARLATEEELALCHSSKHISIIKSSEHMKPRDLNRLGDEYNSIFISNESYT
CALLAAGSCFNSAQAILTGQVRNAVAIVRPPGHHAEKDTACGFCFFNTAALTARYAQSIT
RESLRVLIVDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGAFFPNSEDANYDKVGLGKGR
GYNVNIPWNGGKMGDPEYMAAFHHLVMPIAREFAPELVLVSAGFDAARGDPLGGFQVTPE
GYAHLTHQLMSLAAGRVLIILEGGYNLTSISESMSMCTSMLLGDSPPSLDHLTPLKTSAT
VSINNVLRAHAPFWSSLRVNIPESLRLSLPSPKPKGKCTPGGKGKKSPRQSTPSQSPGQA
THRPDQSGFDELTADLLSLNLNTSTSSNTSPESVAVGGARRKVKPNTHRVSAGLESESPL
KLNPEKAGAGDDTDVKAETPNRSISEPVVTCDSSAVKDQESLVLEAAGGNTVQSVLERVF
GAQATDVDTMYVVDPLPWCPHLESVRPVPAGGIDVFQPCEECGGEAENWICLFCYKVLCG
RYVNQHMVTHGQESGHPVVLSFADLSVWCYACESYVHNKVLHEAKNAAHLVKFGEGIHPF
N
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atggatgcggttccagataccaaaggttcttcaggacctccgagaggaacgccagaaaca
aaaaacaataagaagaatctacaagaggccaggagaaaaggcagaatggatcggagcaaa
gctgaagaggagatgagcaatgaactgcaaaatctggatgttcaaggaaagagcaaagcg
acaggaacaggtcttgtatatgtagacgccttcactcgctttcactgcctctgggatgcc
agtcatccagagtgtccagcgagagtgagcacggtaatggagatgctggagactgagggt
ctgctgggacgctgtgtacaagtggaggctagagctgtgacagaagatgagctgctactc
gtgcacacgaaagagtatgtagaactgatgaaatccacacagaacatgacagaggaagaa
ctgaagactcttgctgagaaatatgactcggtttacctgcatcctgggtttttcagctcc
gcctgtctgtcagtgggatcagttctccagctggtggataaggtgatgacatcacagctg
cgtaatggcttctccatcaacaggcctccaggtcaccatgctcaggcagataagatgaac
ggcttctgtatgtttaataatctggccatagcagcacgatatgctcagaaacgacacagg
gttcaacgagttttaattgtggactgggatgtgcatcacggacagggaatccagtatatt
tttgaagaggatcccagtgtgctgtatttctcagtgcacagatatgaagacggctcattc
tggccccatctaaaggagtctgacagcagttcggttggctcaggagcaggacaaggctat
aatatcaacctgccctggaacaaggtggggatggaaagtggagattacatcacagctttc
cagcagcttctcctgcctgtggcatacgagtttcagcctcaactggtgttagtggccgct
ggatttgacgctgtgatcggtgacccaaagggcgggatgcaagtgagtcctgagtgtttc
tccattctgacacacatgctgaaaggtgttgcacagggaaggcttgtgctggctttagag
ggtgggtataacctgcagtccacagcggagggtgtttgcgctagtatgaggtctcttctg
ggtgacccctgccctcacctgccctcttctggcgctccctgtgaaagtgccttgaagtca
atctcaaagaccatctcagacttgtatccattttggaagagtcttcaaacttttgaaggt
ggtcctctgtctgaagtctcccccctgcccgctccagtatgtgcagaagtgaaggtttct
tctccgatcactgggctagtttatgaccagagaatgatgcttcatcacaacatgtgggac
agtcatcatccagagctccctcagagaatttcacgaatcttctcccgccatgaggagttg
cgcctgctgtcccgttgtcatcggataccagctcgcctagcaacagaagaggagctggcg
ctctgtcacagttccaagcatataagcatcattaagagttcagagcacatgaaacccaga
gatctaaaccgactgggggacgaatacaactccattttcatcagcaatgagagctacact
tgtgccctgctggctgctggctcgtgctttaattctgcacaggccatactcacaggccag
gtgagaaacgctgtggctatagtccgtcctccgggtcatcatgctgagaaagacacagct
tgtgggttctgtttctttaacacagccgctttgactgcacgctatgcccagagcatcacg
cgtgaatctctgcgcgtcctcattgtcgactgggacgttcaccatggaaacggcacacag
cacatcttcgaggaggatgacagtgttctgtacatctccctgcatcgctacgaagatggg
gcattcttcccaaactcagaggatgctaactatgataaggtgggactggggaaaggcaga
ggatacaacgtcaacatcccctggaacggagggaaaatgggagacccagaatacatggcg
gctttccatcacttagtgatgcccatagcaagagagtttgccccagagctggtgctggtc
tctgctgggtttgatgcagcacgaggtgatccgttaggagggtttcaggtgaccccggag
ggctatgctcacctcacccatcagctaatgagtctggctgcaggaagagtgcttatcatt
ctggagggtggttataacctcacttccatctcggagtccatgtccatgtgcaccagtatg
ttgttgggagactctccgccttctctagaccacctgacccctctgaagaccagcgccact
gtcagtattaataatgtcctgcgtgctcacgcccccttctggagctctcttagagtcaac
attccagaatctcttcgtttgtctctaccttcacctaaaccaaaaggcaaatgtacaccg
ggggggaagggtaagaagtctcctcgccaatccaccccttctcagagtcccggacaggca
acacatcgtcccgaccaatccggcttcgatgagctcactgcggatctgctttctctgaat
ctcaacaccagcacctcatctaacaccagcccagagtcagtcgctgttggaggagccagg
cggaaggtgaaacccaacacacacagagtttcagcaggcctggagtcagaatcaccccta
aaactcaaccctgagaaagccggagctggagacgacacagatgtaaaagcagagacacct
aaccgttcgatctcagagcctgtggtcacctgtgattcatcagccgtgaaggatcaggag
agtttagttctggaggctgctggaggaaacactgtgcagtcagtcttagagcgcgtcttt
ggagcacaagccaccgatgtggacactatgtatgtggtggatccgttgccatggtgccca
cacttggagtcagtgcgaccggtgcctgcaggagggattgatgtctttcagccgtgtgaa
gagtgtggaggtgaagcggaaaactggatctgcctcttctgctataaggtgctttgcggg
cgttatgtgaaccagcacatggtgacccacgggcaggagtctgggcatcctgttgtgctt
agctttgctgacctttctgtgtggtgttacgcttgtgaatcatacgtccataacaaggtt
ctgcatgaagccaaaaatgctgctcatcttgtgaagtttggagaggggattcatcctttc
aactaa
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