Danio rerio (zebrafish): 797246
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Entry
797246 CDS
T01004
Symbol
sox18
Name
(RefSeq) transcription factor Sox-18
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
dre
Danio rerio (zebrafish)
Brite
KEGG Orthology (KO) [BR:
dre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dre03000
]
797246 (sox18)
Transcription factors [BR:
dre03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
797246 (sox18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
797246
NCBI-ProteinID:
XP_017209261
ZFIN:
ZDB-GENE-080725-1
Ensembl:
ENSDARG00000058598
UniProt:
E7F9I2
LinkDB
All DBs
Position
23:8797002..8800754
Genome browser
AA seq
431 aa
AA seq
DB search
MNISESSCCQEASSQPSQVAERGTWGASSSTPGPERGHGFDRSRTTELAPVPGSGTRTVS
RTAAEARTGSPDSTRPGALTLGSSEGKSGGESRIRRPMNAFMVWAKDERKRLAIQNPDLH
NAVLSKMLGQSWKALSTLDKRPFVEEAERLRLQHLQDHPNYKYRPRRKKQPKKMKRVEPG
LLLQGLAHGGPGDAYSPHRHAHHLLPPLGHFRDLHPSGAPELESFGLPTPEMSPLDVLEE
GGGDSVFFPPHMQEDVGLSSWINYHQHPNHQPGHHPHHNSHNLQHSHPHLNQKSPLACLP
LQEKCLVVESPNPGGLYPNMTLPESSKAGYYGQIYGSSQPQPAFTSHLGQLSPPPETSAV
AQVAPPSLDAVDQLGPSAEFWGEVDRIEFDQYLSASRTRVSRSAPCEESSALISALSDAS
SAVYYSACITG
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgaatatatctgagtctagttgctgtcaagaggccagttctcagcccagccaggttgcg
gagcgcgggacatggggtgcctcctccagcactccggggcctgagcggggacatggtttt
gaccgcagccggaccacagagctggcaccagtgcctgggtctggaacacggacggtgtct
cgaacagcagcggaggccaggacgggaagcccggactctacccgccctggagctttgacc
ctgggctccagcgaggggaaatcagggggggagtcgaggatcaggaggcccatgaacgcc
tttatggtgtgggcaaaagatgagcgcaaacgactggccatccagaacccagacctgcac
aacgctgtgctcagtaaaatgctgggtcagtcctggaaggcgctgagcacactcgacaag
cgtccgtttgtggaggaagccgagcggctccgcttgcagcacctccaggatcaccccaac
tacaaataccgccctcggaggaagaaacaacccaagaagatgaagcgagtggagccgggt
ctccttctccaaggcttggcccatggaggaccgggagacgcctactcaccacaccgccat
gcccatcatctgctgcctcctctgggacacttccgagacctccacccctctggagctcca
gagctggagagtttcggcctgccgacgccagaaatgtccccgctagacgtgcttgaggag
ggaggcggggattcagtgtttttcccccctcacatgcaggaagatgtgggtctgtcttca
tggataaactaccaccagcatccaaaccatcaacccggccaccaccctcaccacaactcc
cataacctccagcattcccacccacacctcaaccagaagtctccactagcctgcctcccg
cttcaggagaaatgcctggttgtggagtccccgaatcctggcggtctctaccccaacatg
accctcccggagtcctccaaagcaggttattacggtcagatatacgggagcagtcaaccc
caacccgccttcacctctcatctaggccagctgtctcctccacccgagacctcagccgtg
gctcaggtcgctcccccttccttggacgctgtggaccaactgggaccctcagccgagttt
tggggcgaggtggacaggattgagtttgaccaatacctgagtgcaagcaggactcgagtg
agcagaagcgccccttgcgaggaaagcagcgctttgatatcagccctgtccgacgccagc
agcgccgtctattacagcgcctgcattacaggataa
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