Dactylosporangium roseum: Drose_02850
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Entry
Drose_02850 CDS
T08480
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dros
Dactylosporangium roseum
Pathway
dros03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Drose_02850 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dros03400
]
Drose_02850 (ligD)
Enzymes [BR:
dros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Drose_02850 (ligD)
DNA repair and recombination proteins [BR:
dros03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Drose_02850 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
UWZ37251
LinkDB
All DBs
Position
648130..649017
Genome browser
AA seq
295 aa
AA seq
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MPDRVRVEVDGRQLEISNLDKVLYPQAGFTKGEVIDYYTRVAPTLLPHLAGRPLTRVRYP
NGVDGASFFEKNAPAGTPDWVRTVRLPVPGSTKKRERIDFIVVEDLPTLVWLANLAALEL
HTPQWQVDDDGEVLDPDQLVVDLDPGPPAGLPECFEVALLVRDQLRADGLTCCPKTSGRK
GMQLVAPLPGDETADEISAYAKAVAERLAQQRPGLVVAKMARQLRPGKVFLDWSQNNAFK
TTITPYSLRAGASPTVSAPLTWAEVEAGEITAADLTPATVLDRASRLGDLLERAE
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaccgtgtgcgcgtggaggtcgacggccggcagttggagatctccaacctcgac
aaggtgttgtacccgcaggcagggttcaccaagggcgaggtcatcgactactacacccgc
gtcgcgccgaccctgctgccgcatctcgccgggcgaccgctcacccgggtccggtacccc
aacggcgtcgacggcgccagcttcttcgagaagaacgccccggccggcacccccgactgg
gtccgcaccgtccgcctgccggtccccggctcgaccaagaaacgcgagcggatcgacttc
atcgtcgtcgaggacctgcccaccctggtctggctggccaacctcgcggccctcgaactg
cacaccccgcagtggcaggtcgacgacgacggagaggtgctcgaccccgaccagttggtc
gtcgacctcgaccccggcccgcccgccggcctgccggagtgcttcgaggtcgcgctcctc
gtccgtgaccagctccgcgccgacgggctgacctgctgcccgaagacctccggccgcaag
ggcatgcagttggtcgcgccgctgcccggcgacgagacggccgacgagatcagcgcgtat
gcgaaggcggtcgccgaacggctcgcccagcagcggccgggcctggtcgtggcgaagatg
gccaggcagctacgcccgggcaaggtgttcctcgactggagccagaacaacgcgttcaag
acgacgatcacgccgtattccctgcgggccggcgcgtcgccgaccgtcagcgcgccgctg
acctgggcggaggtcgaggccggcgagatcaccgccgccgacctgacgccggcgacggtg
ctcgaccgggcctcacggctgggcgacctgctggagcgcgccgagtag
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