Drosophila sechellia: 6604856
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Entry
6604856 CDS
T01064
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit CG7185 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
dse
Drosophila sechellia
Pathway
dse03015
mRNA surveillance pathway
dse03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
dse00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
6604856
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
6604856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dse03019
]
6604856
Messenger RNA biogenesis [BR:
dse03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
6604856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Motif
Other DBs
NCBI-GeneID:
6604856
NCBI-ProteinID:
XP_002029701
UniProt:
B4HJG3
LinkDB
All DBs
Position
3L:complement(8135178..8140244)
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AA seq
652 aa
AA seq
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MADVVLDLYAEDLDKDFAGQAQDEFGGDGVDLYDDIGGPTESAASGGGGGGTPSADGAAG
PGSGEPGERNSGGPNGVYHQSSGSLTPTMNRRYQLYVGNLTWWTTDQDISNSLRDIGVSD
LQEVKFFENRANGQSKGFSVISLGSESSLRAVLDQLPKKEMHGQAPVVTYPSKQALTQFE
SLQKTRPVPPPQQNGPPRGPAPPSMGGGPMPTGHPGGPQGGGPPGHPPRGMNSIMQPGQY
RPQHMSQVPQVGGPNSGPPRMQPPMHPQGGLMGNQQPPPRYPSAQGQWPGQRPGGPRPGP
PNGPPQRPMFQGGPMGMPVRGPPGPDWRRPPMHGGFPPQGPPRGLPPAPGPGGPHGAPAP
HVNPAFFNQPGGPAQHPGMGGPPHGAPGPQPGMNMPPQQGMNMTPQHGPPPQFAQHGPRG
PWPPPQGKPPGPFPDPQQMGPQLTEVEFEEVMSRNRTVSSSAIARAVSDAAAGEYSSAIE
TLVTAISLIKQSKVAHDERCKILISSLQDTLHGIEAKSYNRRERSRSRERSHRSRQRRER
STSRYRERSRERERDRDRERERDGGSYRERSRSRERERQAPDHYRDDSRSVRPRKSPEPV
VAEAAEAPSSKRYYEDRERYRSSDRERRDRDRDRDRERERDRDRREEHRSRH
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgtggtcttggatctgtacgcagaggacctcgataaggactttgccgggcag
gctcaggacgaatttggaggcgatggagtagacctatacgatgacataggcggtcccacc
gaatcggccgcctcaggcggcggtggcggtggaacgccttccgcagatggagccgcaggg
ccaggctccggggaacccggggaacggaattccggaggtcccaatggggtgtaccatcag
agcagtggtagcctcactccgaccatgaatcgccgctaccagctgtatgtgggcaatctt
acctggtggaccactgaccaggatatctccaattcgctgcgagacattggcgtgagtgat
ctacaggaagtaaagtttttcgagaacagggccaacggtcagtcgaagggcttcagtgta
atctccctcggctcggaatctagcctccgcgccgtgctcgaccagctgcccaagaaggag
atgcacggccaagcgccggtggtcacgtaccccagcaagcaggcactcacccaattcgag
agtctgcaaaagacgcgtccagtgccgccgccgcagcagaatggaccgcccaggggtccg
gcaccacccagcatgggtggcgggccaatgcccaccggacatccaggagggccgcaagga
ggtggacccccaggacatccaccgcgcgggatgaactccatcatgcagccgggccagtac
cgaccgcagcacatgtcgcaggtgccccaggtgggcggacccaactcaggacctccacga
atgcagccgccgatgcatccgcaaggcgggctcatggggaaccaacagccgccaccccgg
tatccgtcagcgcagggccaatggccaggtcagcggccaggcggaccacgaccaggtcca
ccgaacggaccgccgcagcgaccaatgttccaaggaggcccaatgggcatgcccgtcagg
ggtccgccaggtcccgactggcgtcgtccacccatgcacggtggtttcccgccgcaaggt
ccgccacgtggccttcccccagcaccaggtccgggcggaccacacggcgcacccgcaccc
cacgtgaatccagcattctttaaccagcctggtggtcctgcccagcatccgggcatgggt
ggcccgccccacggagcaccaggtccacagccaggcatgaatatgccaccgcaacagggc
atgaacatgactccacagcatggaccgccaccccagtttgcccagcatggaccacgtggt
ccgtggccgccaccgcagggtaagccaccgggtcccttccccgatccgcagcagatgggt
ccgcaactgacggaggtggagttcgaggaggtgatgagcagaaatcgcacagtcagcagt
tcggcgatcgccagagctgtttctgatgcggctgctggtgaatactcgagcgccatagag
acactggtcacagccatttcactgatcaaacagtccaaggtagcgcacgatgagcgctgc
aaaatcctgatcagctcgctgcaggacacgttgcatggcatcgaggccaagagttacaat
aggcgcgaaaggtcgcggtcgagggagcgatctcatcgcagccggcagcgtcgtgagcgt
tccacatccaggtaccgcgagcgatctcgggagcgggaacgcgatcgggatcgtgagcgt
gaacgggatggcggaagctacagggagagatcccgcagtagagaacgtgaacgccaggct
ccagatcactacagggatgacagccgatcggtgcgtccacgaaagtcgccggaacccgta
gtcgccgaagcagcggaggcgccatcatcgaagcgctactacgaggatcgggaaaggtac
cgctcctcggaccgtgagcggcgcgaccgcgatcgggaccgcgaccgcgagcgggagcgt
gatcgcgacaggcgtgaggagcaccgttcccggcattga
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