Dinoroseobacter shibae: Dshi_0012
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Entry
Dshi_0012 CDS
T00612
Symbol
dapE1
Name
(GenBank) succinyl-diaminopimelate desuccinylase
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
dsh
Dinoroseobacter shibae
Pathway
dsh00300
Lysine biosynthesis
dsh01100
Metabolic pathways
dsh01120
Microbial metabolism in diverse environments
dsh01230
Biosynthesis of amino acids
Module
dsh_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
dsh00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Dshi_0012 (dapE1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
dsh01002
]
Dshi_0012 (dapE1)
Enzymes [BR:
dsh01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
Dshi_0012 (dapE1)
Peptidases and inhibitors [BR:
dsh01002
]
Metallo peptidases
Family M20
Dshi_0012 (dapE1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Peptidase_M28
Motif
Other DBs
NCBI-ProteinID:
ABV91761
RoseoBase:
Dshi_0012
UniProt:
A8LJT5
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Position
13129..14268
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AA seq
379 aa
AA seq
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MTDPVALTADLIRCPSVTPEEGGALSLLEARLSAAGFACTRVDRNGIANLFARWGEKGHA
RSFGFNGHTDVVPVGARADWRFDPFGAQVEGDWMYGRGAVDMKSAVAAFAAAAMDFVADT
PPDGAVILAITGDEEGDAKDGTVALLDWMAAQGEAMDVCLVGEPTCPDEMGEMMKIGRRG
SMTFFFEALGVQGHSAYPHRAKNPLPALAKLVDRLAGLELDTGTDHFDPSTLAVTTFDTG
NPANNVIPAACRATVNIRFNDAHSSESLTAMVRGIAAEVAAETGIEITDRVSVSGESFIT
PPGRLSDLVAAAVETETGRVPVLSTSGGTSDARFVQHHCPVVEFGLVGKSMHQVDERVAI
AQIPQLKAIYTRILRDYFA
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccctgttgccctgaccgccgatctgatccgctgcccgtccgtgacgcccgag
gagggcggcgcgctgagcctgctggaggcgcggctgtcggcggcgggtttcgcctgcacc
cgggtggaccggaacgggatcgcgaacctctttgcccggtggggcgaaaagggccatgcg
cggagtttcgggttcaacgggcacacggatgtggtgcccgtgggcgcgcgggccgattgg
cggttcgacccgttcggggcgcaggtggagggtgactggatgtatggccggggcgcggtg
gacatgaaatccgccgtggccgcctttgccgccgcggcgatggatttcgtggccgacacg
ccccccgatggcgcggtgatcctggcgatcaccggggacgaggagggcgatgcgaaggac
gggaccgtcgccctgctggactggatggcggcgcagggcgaggcgatggatgtctgcctg
gtgggggagccgacctgcccggacgagatgggcgagatgatgaagatcgggcgccgcggc
tcgatgacgtttttcttcgaggcgctgggcgtgcagggccattccgcctatccgcaccgc
gcgaagaacccgctgcccgcgctggccaagctggtggatcggctggcggggctggagctg
gataccgggaccgatcatttcgatccctcgacgctcgcggtgaccaccttcgacaccggc
aacccggccaataacgtgatcccggcggcgtgccgggccacggtgaacatccggttcaac
gatgcccattcgtcggaaagcctgaccgcgatggtgcgcgggatcgcggcggaggtggcc
gccgagaccgggatcgagatcaccgaccgggtgtcggtctcgggcgagagcttcatcacc
cccccggggcggctgtcggacctggtcgccgcggcggtggagaccgagaccggccgggtg
ccggtgctgtcgacctctggcgggacgtcggacgcgcggttcgtgcagcaccactgcccg
gtggtggagttcggccttgtgggcaagtccatgcaccaggtggacgagcgggtggcgatt
gcccagatcccgcagctcaaggcgatctacacccggatattgcgcgactatttcgcatga
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