Dipodomys spectabilis (banner-tailed kangaroo rat): 122122732
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Entry
122122732 CDS
T07891
Symbol
Col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
dsp
Dipodomys spectabilis (banner-tailed kangaroo rat)
Pathway
dsp04151
PI3K-Akt signaling pathway
dsp04510
Focal adhesion
dsp04512
ECM-receptor interaction
dsp04820
Cytoskeleton in muscle cells
dsp04926
Relaxin signaling pathway
dsp04933
AGE-RAGE signaling pathway in diabetic complications
dsp04974
Protein digestion and absorption
dsp05146
Amoebiasis
dsp05165
Human papillomavirus infection
dsp05200
Pathways in cancer
dsp05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
dsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
122122732 (Col4a1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122122732 (Col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
122122732 (Col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122122732 (Col4a1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
122122732 (Col4a1)
09154 Digestive system
04974 Protein digestion and absorption
122122732 (Col4a1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
122122732 (Col4a1)
09162 Cancer: specific types
05222 Small cell lung cancer
122122732 (Col4a1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
122122732 (Col4a1)
09174 Infectious disease: parasitic
05146 Amoebiasis
122122732 (Col4a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
122122732 (Col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dsp04147
]
122122732 (Col4a1)
00536 Glycosaminoglycan binding proteins [BR:
dsp00536
]
122122732 (Col4a1)
Exosome [BR:
dsp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
122122732 (Col4a1)
Glycosaminoglycan binding proteins [BR:
dsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122122732 (Col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
122122732
NCBI-ProteinID:
XP_042552991
LinkDB
All DBs
Position
Unknown
AA seq
1669 aa
AA seq
DB search
MGPRLGVWLLLLPAALLLHEERSRAAAKGGCAGSGCGKCDCQGVKGQKGERGLPGLQGVI
GFPGMQGPEGPHGPPGQKGDAGEPGLPGTKGTRGPPGAAGYPGNPGLPGIPGQDGPPGPP
GIPGCNGTKGERGPLGPPGLPGFSGNPGPPGLPGMKGDPGEILGQVPGMLLKGERGFPGH
PGIPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGSSFQGPKGDKGDQGVSGPP
GVPGQAQVKEKGDFAPTGEKGQKGEPGFQGMPGFGEKGEPGKPGPRGKPGKDGEKGEKGS
PGFPGDSGYPGLPGQMGPQGEKGDVGLPGPPGIVIGTGPLGEKGERGYPGTPGSRGEPGP
KGYPGLPGQPGPPGLPSPGQVGPPGFPGERGEKGSQGLPGVSLPGPSGRDGAPGPPGLPG
PPGQPGHTNGIVECQPGPPGDQGPPGIPGQQGLTGEMGEKGQKGDSCLACDTEGLQGPPG
PQGPPGEIGFPGQPGAKGDRGLPGRDGLEGLPGPQGAPGLMGQPGAKGEPGEIYFDMRLK
GDKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDI
GPPGPPGFGPIGPIGDKGQAGFPGSPGSPGLPGPKGEAGKVVPLPGPPGAEGLPGAPGFP
GPQGDRGFPGTPGRPGLPGEKGAVGQPGIGFPGPPGPKGVDGLPGDAGPPGSPGRPGFNG
LPGSPGVPGQKGEPGIGLPGIKGQPGLPGIPGTPGEKGSIGGPGVPGEHGLIGPPGLQGV
RGDPGPPGVQGPAGPPGAPGVGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPG
PKGDKGAQGLPGLTGQTGLPGPPGQQGTPGVPGFPGSKGEMGVMGTPGQPGSPGPAGVPG
LPGEKGDHGFPGSSGPRGDPGFKGDKGDIGLPGKPGSMDKVDMGSMKGEKGDQGEKGQIG
PTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGISGTPGAPGLPGPKGSVGGMGLPG
TPGEKGVPGIPGPQGIPGIPGEKGAKGEKGQAGLPGIGLPGRPGDKGDPGLAGFPGSPGE
KGQKGSTGIPGMPGSPGPKGLPGSIGYPGSPGLPGEKGDKGLPGLDGIPGVKGEAGLPGT
PGPTGPAGQKGEPGSDGIPGSAGEKGEPGLPGRGFPGFPGAKGDKGSKGEVGFPGLAGSP
GIPGSKGEQGFMGPPGPQGQPGLPGTPGRPVEGPKGDRGPQGQPGLPGLPGPMGPPGLPG
LDGLKGDKGNPGWPGTPGAPGPKGDPGFQGMPGIGGSPGITGSKGDMGPPGVPGFQGQKG
LPGLQGLKGDQGDQGIPGSKGLPGPPGPPGPYDVLKGEPGLPGPEGPPGLKGLQGPPGPK
GQQGVTGSAGVPGPPGAPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTP
SVDHGFLVTRHSQTTEDPSCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDGIRPFISRCAVCEAPAMVMAV
HSQTIQIPPCPNGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggggccccggctcggcgtctggctgctgctgctgcccgccgcccttctgctccacgag
gagcggagccgggccgccgcgaagggtggctgtgctggctccggctgtggcaagtgtgac
tgccaaggagtgaagggacaaaagggagaaagaggcctcccaggattacaaggtgtcatt
gggtttcctggaatgcagggacccgaggggccacatggaccaccaggacaaaagggcgat
gctggagagccaggacttccgggcacaaaagggacaaggggacccccaggagcagccggt
taccctggaaacccaggacttcctggtattcccggccaagatggtcccccaggaccccca
ggtatcccaggatgcaacggtacaaagggagagaggggcccgcttgggcctcctggcctg
ccaggcttcagtggaaatcccggaccacctgggttaccagggatgaagggagatccaggt
gaaatacttggccaggtgcccgggatgctgttgaaaggagagcgaggatttcctggccat
ccagggatacctggctcacccggattgccaggccttcagggacctgttggccctcctgga
tttaccggaccgccaggtccgccaggccctcctggtcctccaggtgaaaagggacaaatg
ggctcaagttttcaaggaccaaaaggggacaagggcgatcaaggggtcagtggacctcca
ggagtaccaggacaggcacaagttaaagagaaaggggactttgccccaacgggagaaaag
ggtcaaaaaggtgaacctggatttcagggaatgccaggctttggagaaaaaggtgaaccc
ggaaagccagggccccggggaaagcctgggaaagacggggagaaaggagagaaggggagt
ccgggctttcctggcgactcggggtacccaggactcccaggccagatgggtccacagggt
gagaaaggtgatgttgggcttccaggccctccaggaattgtcataggcaccgggcccctg
ggggaaaaaggagagcgaggctacccaggaactcctggctcgagaggagagccaggccct
aaaggttaccccggattaccaggccagccaggacctccaggtctccccagcccagggcag
gtgggccctcctggcttccctggagagagaggagaaaaaggcagccaaggccttccagga
gtgtctttgccaggaccaagtggaagagacggagcccctggccctcctggccttcccggg
ccccctgggcagccaggccacaccaatggcattgtggagtgccagcctggaccgcctggg
gaccagggccctccaggaattcccgggcagcagggactgacgggcgagatgggagagaag
ggtcagaaaggtgacagctgcctcgcctgtgacacagaaggacttcaagggcctcctggg
ccacaggggcctccgggagagataggtttcccaggccaaccgggtgccaaaggtgacaga
ggcttgcctggaagggacggtcttgaaggactgccggggccacaaggtgcgcctggactg
atgggccagccaggagccaagggagagcctggcgagatttatttcgacatgcgactcaaa
ggcgataaaggagaccctggttttccgggacagcccggcatgccaggaagagcggggtcc
ccgggacgggacggccaccccgggcttccagggcccaaaggctccccgggttcagtagga
ttgaagggagaacgtggtccccctggaggagttggcttcccgggcagccggggtgacatc
ggcccgcctggacccccaggatttggccctattggccccattggtgacaaaggacaggca
ggatttcctggaagccctggatccccaggtttgccaggtcccaagggtgaagcaggaaag
gttgttcctttgccgggtcctccgggagcagaaggacttccgggagccccgggattccca
ggccctcaaggtgaccgaggctttccaggaactccaggccggcctggcctcccaggagag
aagggtgcggtgggccagccagggattggatttcctgggcctccaggtcccaaaggtgtt
gatggcttacctggagacgcaggaccccctgggagcccgggtcgccctgggtttaatggc
ttgcctggcagtcccggcgtaccaggccagaagggcgagcctggaattggtctgcctgga
atcaaaggacagccgggtcttccaggcattcctggcacccccggagagaagggcagcatt
gggggaccaggcgttcccggagagcatgggctgataggcccccctggccttcagggggtc
agaggtgacccagggccacctggagtacaaggacctgcaggacccccaggcgcgccagga
gtcggcccccctggggctatgggcccacctggagggcagggaccccccggctcatcaggt
cctcctggagtcaaaggagagaagggttttcccggattcccgggactggacatgcctggt
cctaaaggagataaaggggctcagggtcttcccggcctgactggacagacagggctccct
ggcccccccggacagcaagggacacccggcgttccaggcttcccaggttccaagggagaa
atgggcgtcatggggactcccgggcagccaggctcaccgggacctgcaggtgtccccgga
ttacctggtgaaaaaggagaccacggcttccccggctcctcgggacccaggggagaccct
ggcttcaaaggcgataagggggatatcgggcttcctggaaaaccggggtccatggataaa
gtggacatgggcagcatgaagggagagaagggagaccaaggagagaaaggacaaattgga
cccactggcgataaaggctcccgaggagatccggggaccccaggggtacctgggaaagat
gggcaggccgggcatcctgggcagccaggacctaaaggtgacccaggaataagcggcacc
ccaggggccccaggacttcctggtcccaaaggatcagtcggtggaatgggcttgcctgga
acacctggagagaagggtgtgcctggcatcccaggcccacagggcattcctggcatacct
ggagagaaaggagccaaaggcgagaaagggcaggccggtctgcctggcatcggccttccg
gggcggcctggcgataagggagacccagggctggcgggcttcccggggagccctggagag
aagggccagaagggcagcacaggaatcccaggaatgccggggtctcccggccccaagggg
ttgccagggagcatcggctatccaggaagtcctggattgcctggtgagaaaggagacaaa
ggcctaccaggattagatggcatccctggtgtcaaaggagaagcaggtctccctgggact
cctggtcccacaggtccagctggccagaaaggagagcctggcagtgatggaatcccaggc
tctgcaggggagaagggtgagccaggtctacccggaagaggattcccaggtttcccagga
gccaaaggagacaaaggttccaagggtgaagtgggcttccccggattagctgggagtcca
ggaattcctggatccaaaggcgagcaaggattcatgggtcctcccgggccccaaggacag
ccaggcttgcctgggacccctggccgccccgtggaggggcccaaaggagaccgcggacct
cagggacagccgggcctgccagggcttccgggacccatggggcctccagggctgcccggg
ctcgatgggctaaaaggtgacaaggggaacccaggctggccaggaacacccggtgccccc
gggcccaagggagacccaggcttccagggcatgccgggcatcggtggctctccaggaatc
acaggctcgaagggagatatgggtccaccaggagttccaggattccaaggtcagaaaggt
cttcccggcctccaaggactgaagggagaccagggagatcaaggcatacctggctccaaa
ggtcttcccggtcccccgggcccccctggtccgtatgatgtcctcaagggagagccaggg
ctccctggtcctgagggtcccccaggcctgaaagggctccaaggacccccaggccccaaa
gggcagcaaggtgtgaccggctcagcgggtgttcccgggcccccgggcgcccctggcttc
gacggtgcccctggccagaaaggagagaccggacctttcgggcccccaggtcccagaggg
tttcccgggcccccggggcccgatgggctgcccggctccatggggcctccgggcacgcca
tctgtggaccacggcttcctcgtgaccagacacagtcagacaacagaagacccatcctgt
cctcctggaaccaagattctttaccatgggtactcgctgctctacgtgcaaggcaatgag
cgggcccacgggcaggacctgggcacggctggcagctgcctgcgcaagttcagcaccatg
cccttcctgttctgtaacatcaataacgtgtgcaactttgcctcgcggaacgactactcc
tactggctgtccacccccgagcccatgcccatgtccatggcgcccatcactggggacggc
atccggccgttcatcagcaggtgtgcggtgtgtgaggcgccggccatggtgatggccgtg
cacagtcagaccatccagatcccaccgtgccccaacgggtggtcctcgctgtggatcggc
tattccttcgtgatgcataccagtgccggtgctgaaggctctggccaagccttggcatcc
cccgggtcctgtctggaagagtttagaagcgcgccgttcatcgagtgccacggccgtggg
acctgcaattactacgccaacgcctacagcttttggctcgccaccatcgagagaagtgag
atgttcaagaagcccacgccgtccaccctgaaggccggggagctgcgaacccacgtcagc
cgctgccaagtgtgcatgaggagaacataa
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