Dichomitus squalens: DICSQDRAFT_145041
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Entry
DICSQDRAFT_145041 CDS
T03133
Name
(RefSeq) tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
dsq
Dichomitus squalens
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dsq03016
]
DICSQDRAFT_145041
Enzymes [BR:
dsq01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
DICSQDRAFT_145041
Transfer RNA biogenesis [BR:
dsq03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
DICSQDRAFT_145041
Prokaryotic type
DICSQDRAFT_145041
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
18836478
NCBI-ProteinID:
XP_007363213
JGI:
145041
LinkDB
All DBs
Position
Unknown
AA seq
563 aa
AA seq
DB search
MDVDSTGTKDPPPATTPSLKRPQEEVLEEVNGASKRQRPDDPKAVEVDQGEGEGEGGGEA
AEASTQGAKGKEKGKGKKDGGRNKRQRGKKGEETAYERTRRRGTRPEGEAAPTTEDGEPK
APRLPKRQCALLIGFCGDGYNGMQIQPDPKLRTIEGVLFDALIKVGAVSKDNSDNPTKVK
LGRAARTDAGVHAAGNVVSMKLINVIPGVPDLVARINEELPPEIRLWSILRVQNSFNART
TCDSRKYTYFFPSYLMIPPKPGSGLYNTLKSQGAEPPAHPFWDRVDAEQQASPQDDLRRK
RAYRIAPEQLASLREAATKFEGSHNFHNFTVGRDFRDRSCQRFLRSIEILDPAVYGDTEW
IAVLLHGQSFMLHQRKMISALVLSCRTGTPPHLIEEMYGPRQVFIPKMPALGLLLEYPIF
ESYSKRVASVNEKLRPDDPEYRPSIDFEAHREQLDEFKQNHIYSKMRSIEDQFGIFDGWI
RSIDAYAGHDLEYLNAKGVIPASAVIKRGEYRHNPFREKKRFDATSFPAGSTGANAASVE
DEEGSEEEEALPLDKEELADLEG
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggatgtagactctacgggtacaaaggacccgccacccgcaacgaccccgagcctcaag
agaccccaggaggaagtgctcgaggaggtgaacggcgcatccaaacgccaaaggcctgac
gatcctaaggcggttgaagtggatcaaggtgagggcgagggcgaggggggcggtgaagcg
gcagaggcgagtacccaaggtgcgaagggtaaggagaagggaaaggggaagaaagatggc
ggcaggaacaaaagacaacggggcaagaagggcgaggagactgcctatgagcggaccagg
agaagagggactcggccggaaggcgaagcggcccctacgacagaggatggcgagccgaaa
gcacctcgtctgccaaaacggcagtgcgcgctgctcattgggttctgcggggacggatat
aatggaatgcaaatacaaccggacccgaagctacgcaccatcgagggtgtgctcttcgat
gcactcataaaggtcggagctgtttcaaaagacaactcagacaacccaacgaaggtaaag
ctcgggagggctgcgcgcacagacgcgggcgtgcacgctgcgggcaatgtcgtgtctatg
aaactcattaatgtcattcctggcgtccccgacttggtcgcgaggatcaacgaggagctt
ccgcccgagatccgtttatggagcatcctccgggttcagaactcgttcaacgcgcgaacg
acatgcgacagccgcaagtacacctacttcttcccgtcatacctcatgatccctccaaaa
cctggcagcggcctctacaacactctcaaatcacagggtgcggagccccctgcgcatcca
ttctgggatcgggtggacgccgaacagcaggcaagcccgcaggatgacctccggagaaaa
cgcgcgtatcggatcgcgcctgaacagctcgcatctcttagggaggccgcgacgaagttt
gagggatcgcacaacttccacaacttcaccgttgggagagatttcagggatagaagctgt
cagcgattcttgagatctattgagattcttgatcctgcggtatacggagatactgaatgg
atagcagttcttctacacgggcagagttttatgctgcaccaacgcaaaatgatctccgcc
ctcgtactatcgtgtcgaacgggcactccgccacatctcatcgaagagatgtatgggcca
cgccaggtgttcatacctaaaatgcccgcactgggtctcttgctcgaatacccgatcttt
gagagctacagcaagcgtgtcgcgagcgtgaacgaaaagctccggcccgacgaccccgag
taccgtccctcgatcgatttcgaggcccaccgagagcagctagacgagttcaagcagaac
catatctactcgaagatgcgttcgatagaggatcagttcggaatctttgatggctggatc
cggtccatcgacgcatacgcaggccacgatcttgagtacctgaacgcgaagggcgtcata
cctgcgtcggcggtgatcaagcgcggcgagtaccgccacaacccgttccgggagaagaag
cgcttcgacgcgacgtcgttcccggcgggcagcacaggtgcgaacgccgcgtccgttgaa
gacgaggagggttcggaggaggaggaagcgctaccgctcgacaaggaggagcttgctgat
ctggaagggtaa
DBGET
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