Dichomitus squalens: DICSQDRAFT_48670
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Entry
DICSQDRAFT_48670 CDS
T03133
Name
(RefSeq) vacuolar assembling protein VPS41
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
dsq
Dichomitus squalens
Pathway
dsq04138
Autophagy - yeast
dsq04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09140 Cellular Processes
09141 Transport and catabolism
04138 Autophagy - yeast
DICSQDRAFT_48670
04148 Efferocytosis
DICSQDRAFT_48670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dsq04131
]
DICSQDRAFT_48670
Membrane trafficking [BR:
dsq04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
DICSQDRAFT_48670
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
WD40
Vps39_2
Vps39_1
WD40_like
zf-RING_16
Hira
zf-RING_2
ANAPC4_WD40
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
18842126
NCBI-ProteinID:
XP_007361597
JGI:
48670
LinkDB
All DBs
Position
Unknown
AA seq
996 aa
AA seq
DB search
MTEASDEDEHNEEVKSHENGEAHVENENETEESEGEESEEEATDEEEEDEGEEDDDDDDD
EPALKYERLGGIAHQLLQKDSASALAYSNQHLALGTHGGKLHVLDLAGQPVKSFAAHTAS
ILDISMDSTGDWIATASIDGQVAVYSLSNPETYVFNMKRPLRTVALEPSFAKSSTRSVVS
GGMAGNLVLHEKGWLGYKETILHSGEGPVWQVRWRDNLIAWANDLGVKIYDTHSQSRITF
IDRPADSPRADLFKCTLHWQDENTLLIGWADHIKVARVRARPRKSSGSNLPPLLVEITAV
FQLDCMISGIVPHLMTRSPSAVQTHDALVKNGSVRSTVSPILTSFLILAYTPPDTSLLTG
NEATADRAEQARKLAERPELRIISRSGEELSADALGISGYERWGCNDYVLVDIEAAPAKG
PPGAAQGGERYYIVCSPRDIVVVKPRDWRDHVAWLVERKRYEEALDVIERMGHEEPGVTK
AEKDELDAVQIGQRYVEHLVGEGDFVKAARLCPKVCGHDTKRWEDWIFVFAQKHQLQAII
PFVPTESPTLGHLVYEMILAHFLQHDRQTLLQTIKTWPKGIYDISAVIVAVQSELDRAPS
SSSKKPDGPDTVILMECLAELYTLNRQPGKALPYFLRLRRPNVFDLIRENNLFTDVQDQA
LLLVEFDQELQEKRKKDGEDIDTDPTAAITLLVDHIHSIPMTRVVQQLQNRPYYLYLYLN
ALFQKDPHLTSSYADTQVKLYAEYAPRKLIDFLRASQYYSLEEAYKVCNERDLVLEMVFL
LGRMGNNKKALHLIIERLGDVNRAIDFAKEQHDDDLWEDLLRYSETRPAFIRGLLENVGA
EIDPIRLIRRIKNGLEIPGLKGALIKILHDFNLQVSLLEGCQTIMNGDCADFARKLHRNQ
TSGFFLSAKTPCPICNKPIGQGLNSLALLFLCRHVVHADCVQHDEELPHQPDPTLVGMGI
GGQPGLSGKVAFTAILRARITQGCPVCHKRSEGQRT
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atgactgaggcgagcgacgaggatgaacacaacgaagaggtgaagtcgcatgagaatggt
gaagcgcatgtggagaatgagaatgagactgaggagagcgagggggaagagagcgaggaa
gaggccacagatgaagaggaagaggatgagggtgaggaagacgacgacgacgacgatgac
gagcccgcgctcaagtacgaacgtcttggaggcattgcgcatcagctcctacagaaggac
tccgcatctgcgctcgcttattcgaaccagcatctggctcttggaacacatgggggaaag
ctacatgtactcgacttggctggccagccggtcaaatccttcgcggcgcatactgcatcc
atccttgacatatctatggatagcacaggcgattggatagccacagcttcgatagacgga
caggtcgcagtatattccctgtccaaccccgagacatacgttttcaatatgaaacgtcca
ctccgcactgtcgccctcgaacccagcttcgcgaagagcagtacgcgttcggtcgtctca
ggtggcatggctggtaacctcgtcctgcacgagaaaggctggcttggatacaaggagacg
atcctccactctggcgaggggcccgtctggcaagtccggtggcgcgacaatctcattgca
tgggcgaacgacctcggcgtcaagatctacgacacgcattcgcagagtcgcataacgttc
atcgaccggccggccgacagcccgcgtgcagacctgttcaagtgcacgctccattggcaa
gacgagaacacgctccttattggttgggcggaccacatcaaggttgcgcgcgtccgcgcg
cgcccccgcaagtcctctggctccaatctccctcctctgctcgtcgagatcactgctgtc
ttccagctcgactgtatgatctccggcatcgttccccatctcatgactcgatccccttct
gccgtccaaacccatgatgccctcgtgaaaaacggctcagtgcgctcgacggtgtcccct
attctgacttcgttcctcatcctcgcgtacacgccacccgatacctcactccttactgga
aacgaagcgacggcagatcgggcggagcaggcgcgcaagctcgcagaacgccccgagctc
cgtatcatctcgcgctcgggtgaggagctctctgcggacgcactcggcatctctggctac
gaacgatggggatgtaacgactatgtcctcgtagacatcgaggccgccccagctaagggc
cctcccggcgctgcacaaggtggagagaggtactacatcgtctgtagtccccgtgatatc
gtcgtagtgaagccgcgcgactggcgcgaccacgtcgcatggctcgtcgagcggaagcgg
tacgaagaggcgctcgacgtcatcgagcgcatggggcacgaagaacctggcgtgaccaag
gcggaaaaggacgagctggacgcggtgcagatcgggcaacgctacgtagagcacctcgtc
ggcgagggcgacttcgtcaaggcggcgcgcttgtgcccgaaggtctgcggccatgacacg
aaacgatgggaagattggatcttcgtatttgcgcagaagcaccaattacaggcgatcatc
ccgttcgtcccgacggagtcgccgactttgggacatctggtgtatgagatgatccttgca
cactttcttcaacacgatcgacagacgctactgcaaacgatcaagacatggccgaagggt
atctacgacatttccgccgtcatcgtagccgtccaatccgaacttgaccgtgcgccgtcg
tcttcgtctaagaagcctgacgggccggatacggtcattctcatggagtgcctcgcggag
ctctacacactcaaccgccagccaggcaaagcactcccgtacttcctccgcttacgtcgt
ccaaatgtgttcgatctcattcgagagaacaacctcttcacggacgtgcaggaccaagct
ctgctcctcgtcgagttcgatcaggagttacaggagaagcgcaagaaggatggggaggac
atcgatactgatccaaccgcggccataacgctgctggtcgatcacattcactcaataccc
atgactcgtgttgtgcagcagctgcagaaccggccatattatctatacctctacttgaat
gcgctcttccagaaggacccccacttgacctcttcatacgccgatacccaggtcaagctc
tatgcagagtatgccccacgcaaactcattgatttcctgcgcgccagccagtactatagc
ttagaagaggcgtacaaagtttgcaacgagcgcgacctcgtactagagatggtcttcctt
cttggacgcatgggcaataataagaaggcgctacatctcatcatcgagaggctaggagac
gtcaatcgcgctattgatttcgccaaggagcagcacgacgatgacctctgggaggacctc
ttgcgatactcggagacaagaccggcgttcatacgcggattactggagaacgttggagcc
gagattgatcctattcgtctcatccgccgcataaagaacggtctggagattcctggtctg
aagggcgccctcatcaagatcctccacgacttcaacctgcaagtgtcattgctggagggc
tgccagacaatcatgaacggcgactgcgcagacttcgcacggaagctacatcgaaatcag
acgagcggcttcttcctcagtgcgaagacaccatgtccgatctgcaacaagccgattggg
caaggactcaatagccttgcgcttctcttcctgtgtcgtcatgtcgtgcacgccgactgt
gtccagcacgatgaagagctgccacatcaaccggatccaacattggtcggtatggggatt
ggaggccagccgggtctgagtggcaaggttgcgttcacggccatccttcgcgcgaggatt
actcaaggttgcccagtatgccacaagcgaagcgaagggcaacggacttga
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