Dichomitus squalens: DICSQDRAFT_61011
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Entry
DICSQDRAFT_61011 CDS
T03133
Name
(RefSeq) tRNA pseudouridine synthase D
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
dsq
Dichomitus squalens
Brite
KEGG Orthology (KO) [BR:
dsq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dsq03016
]
DICSQDRAFT_61011
Enzymes [BR:
dsq01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
DICSQDRAFT_61011
Transfer RNA biogenesis [BR:
dsq03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
DICSQDRAFT_61011
Prokaryotic type
DICSQDRAFT_61011
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TruD
Motif
Other DBs
NCBI-GeneID:
18843011
NCBI-ProteinID:
XP_007366003
JGI:
61011
UniProt:
R7SYF8
LinkDB
All DBs
Position
Unknown
AA seq
818 aa
AA seq
DB search
MQQIMETDVGISEYIGFDVPKIEGIIKQRFTDFLVFEVDQDSQVIHLKSLGMPSSSKKGG
AATATGDATPAEPTGVATSEQKGAETLAAPVERPVEASTTEPAHESAEPTAEGEAKAEDE
EPLQDDEPWPERFTNSLKPFLSEEVIVRVRELYLEGPEPPFVSDSGWAGRQAKVAGGTGT
VAGETGKLAGGTGDAAEASSTHEPAEESESKGKGKRGRDRGRGGRGGRGGRGGGRGGRPG
AKEDHRKVLSDPIASKETRTGLHQIIRDLFGGKLDTETDTTASPSDEGSRIAIKWSKRGG
GGRGGRGGNRGGGRGGRTERGNYPPYIHFTLQKTNRDTQDALAHLSRTLHCNVKDLSVAG
TKDKRGVTVQRVSLRRGNKTVEDVWKMANGLNGRRTMEEVMTQRGERGVRIADLNYRKAS
LELGMLKGNAFVITLRNVRVDSLETLDRAMNVIKTKGFINYYGMQRFGTASIPTHTIGLA
LLKGDWHRAVSLILRHRPGEHPDVVAARNAWLVDKDLDRALDLMPRRVVAERCILESYKK
QKGDTRNAMGALSTIPRNLRLMYIHAYQSYVWNAIVSERIRTYGAEKPVVGDLVFEGASS
AKADADGEDVEIALDAAEGENSLEDKVANEDNAGTSSRSSKRSRKAWEPPKVKTLTDADL
DNYSIFDVIMPLPGKDVDFPGGALGERYREFLRRDGLDPDNFVRKQKDYTLGGSYRSVLH
LPKELSWAVMKYTDPDVPLAQSDEDKLLGFPPPVSDENGKFIALQINLQLGTAAYATMAL
REVTKTETSSHYQTSLTQASEDQKYRTADGGAEEEEAE
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagatcatggagacggacgtcgggatatccgagtacattggctttgacgtgcca
aagattgagggtatcatcaagcagagattcaccgatttcttggtgtttgaggtcgaccaa
gatagtcaagttatacatctgaagtcgcttggaatgccttcatcatctaagaagggcgga
gctgctacagctactggggacgctacgcctgctgagcctacaggcgtagctactagcgaa
caaaagggtgctgagacactcgcggcaccagtggagcggcctgtggaggccagtactacc
gaacccgcacatgaatctgctgagccaactgcagaaggggaggcgaaagccgaagatgaa
gaaccactgcaagacgatgaaccgtggccggaacgtttcacaaactctctcaaacccttc
ttgtctgaagaagtcatcgttcgcgttagagaactctaccttgaaggtccagagccgccg
ttcgtgagcgacagtggttgggctggaaggcaagcgaaagtagctggcgggactggaaca
gtagctggcgagactgggaagctagctggcgggactggggatgctgcggaagcgtcttcg
acacacgagcctgcagaagagtcagaatcgaagggaaagggcaagcgagggagggaccgg
ggcaggggtggtagaggcgggaggggtggaaggggtggaggaaggggtggcaggcctggc
gcgaaggaagaccaccgtaaagtgctctctgatccgattgcctccaaagaaacccgtacg
ggcctacaccaaatcatacgggacctgttcggtggtaagctggacaccgagacggacacc
actgcgtcgccttcggacgaaggttcgcgtatcgctatcaaatggtcgaagcgtggggga
ggaggtcgaggaggtcgtggcggtaatcgtggcggcggtcgtggagggaggacagaaagg
gggaactatcctccatacatccacttcacgctccagaagacgaaccgtgacactcaagac
gccctcgcccacctgtcacgcacgttgcattgcaacgtcaaagatctctccgtggcgggg
acgaaggacaagcgtggcgtcaccgtacaacgcgtgtcattacgacgtggtaacaagacc
gttgaggacgtctggaaaatggctaatggtctcaatggtcgccgaacgatggaggaggtc
atgacacagcgaggcgagcgaggagtgaggatagccgacctgaactaccggaaggcgagc
cttgagctgggtatgctcaagggcaatgcgttcgtgatcacgctcaggaatgtgcgcgtt
gactcattggagaccctggaccgcgctatgaatgttatcaagacgaaaggcttcatcaac
tactatggtatgcagcgcttcgggacagctagcatccccacgcacacgattggactcgcc
ctactgaagggagactggcatagagctgtcagcctcattctccgtcaccggccaggcgag
catccagatgtcgtcgcagcacggaatgcatggctggtagacaaagacctcgacagagca
ctggacctcatgccccgacgcgtggttgccgagcggtgtatccttgagagctacaaaaag
cagaagggcgacacccggaacgcgatgggagcgctgtcaacgatccctcgcaatctcagg
ctcatgtatattcatgcataccagtcctatgtttggaatgccatcgtctctgaacgtatc
cggacttacggagcagaaaagcccgttgttggagacctggtctttgaaggagcatcttcc
gctaaggccgacgctgacggggaagatgtggagatcgctttagatgctgccgaaggcgag
aactccctagaagacaaggtggccaatgaggacaatgcaggaacttcgagcagatccagc
aagagatcgaggaaagcctgggaaccgccaaaggtcaagacactcaccgacgcggacctg
gacaattattccatattcgacgtgatcatgcccttgcccggtaaagacgtcgacttcccg
ggtggcgctctcggcgaacgatacagggagttcttgcgcagagacgggcttgacccagac
aactttgtccgtaaacagaaggactacactctcggtggctcctaccgcagtgttctccat
ctacccaaggagctgtcgtgggccgtcatgaagtataccgatccagatgtgccccttgca
cagtcggatgaggacaagctgcttgggtttcccccacccgtttcagatgagaatggcaag
ttcatcgccctccaaatcaacttgcagctcggtaccgccgcctacgctacaatggccctt
cgcgaggtaaccaagacagaaacaagctctcattaccagacatctctcacgcaagcgtct
gaagatcaaaaataccgcacggcggatggcggcgcggaagaggaagaagcagagtag
DBGET
integrated database retrieval system
