Desulfomonile tiedjei: Desti_0133
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Entry
Desti_0133 CDS
T02147
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dti
Desulfomonile tiedjei
Pathway
dti03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Desti_0133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dti03400
]
Desti_0133
Enzymes [BR:
dti01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Desti_0133
DNA repair and recombination proteins [BR:
dti03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Desti_0133
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AFM22880
UniProt:
I4BZY9
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All DBs
Position
163464..164393
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AA seq
309 aa
AA seq
DB search
MKHTRSDNTKSSITIEGKKLHLTNLDKVLYPATGFTKGQVIEYYAKISEVLLPHVKNRPL
TLKRYPNGVDGEYFYEKMCPSHHPDWIQTTRVASQHRKFVDYCTIDGLASLIWVANLASL
ELHTSLSHSDNVLRPSMIVFDLDPGEPAGLLQCVEVSLIFRDMLRDLGLAGFAKTSGGKG
LHLYVPLNTETDYDRTKTFAQALARSLAKRMPKLVTANMRKDLRKGKVFVDWSQNDDHKT
TVCVYSLRAREKPTVSAPIAWSTLETCHKKKNASGLVLDTEQVLKQVEKEGDLFAEVVSL
RQKLPELAV
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
gtgaaacatacacgatctgacaataccaaatcatcgataaccatcgaaggtaaaaagctc
cacctgacgaatctcgataaagtgctttatcccgcaaccggttttaccaaaggccaggtg
atcgaatactacgcgaaaatttctgaggttcttcttccgcacgtgaagaatagacctctc
accttgaaacgatatccgaacggcgttgacggagaatacttctacgagaagatgtgtccg
tcacatcatccggactggatacagaccacccgtgttgcgagtcagcaccgaaagttcgtg
gattattgcaccatcgacggtcttgcgtctttgatctgggtggccaatcttgcctctctt
gagctgcatacctcgctttctcattcggataatgtgcttcgaccttccatgatagtcttc
gatctcgatccgggggagcctgcaggattgcttcaatgcgttgaagtgtcgctcatcttt
cgagacatgttgcgggatctggggttggccggtttcgcgaagaccagtggaggaaaaggt
cttcacctgtacgttccattgaacacggaaactgattacgatcgtaccaaaacatttgcg
caagctcttgccaggtcattggccaaacgcatgccgaaactcgtcactgcaaacatgaga
aaggatctgcgtaaaggaaaagtgttcgtggactggagccaaaacgacgatcacaaaaca
acggtgtgcgtgtattccttgagagcacgcgaaaagccgaccgtatctgctccaatagcg
tggagtacccttgaaacctgccataaaaagaaaaatgcttccggccttgtcctggatacc
gaacaggtgctcaagcaagtcgaaaaagaaggcgacctctttgcggaagtggtttcattg
agacaaaagcttccggaactcgcggtgtga
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