Dietzia timorensis: BJL86_2779
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Entry
BJL86_2779 CDS
T04608
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
dtm
Dietzia timorensis
Pathway
dtm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
dtm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BJL86_2779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dtm03400
]
BJL86_2779
Enzymes [BR:
dtm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BJL86_2779
DNA repair and recombination proteins [BR:
dtm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BJL86_2779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ANI93539
UniProt:
A0A173LPF1
LinkDB
All DBs
Position
complement(2970600..2973071)
Genome browser
AA seq
823 aa
AA seq
DB search
MATNGRKVDVEGHELKVTNLDKVFYPSTGTSKADVIDYYSRIAPVMVPQATRRAATRKRW
VNGVGTKADPAKAFFRKNLERSAPSWVPRADIEHKKGTSTYPLIDERAVLVWLAQVAALE
IHTPQWRFDEENEPLNPDRLVLDLDPGEGVELRQCAEVAVWCREIIDGMGLDAFPVTSGS
KGLHIYSPLDGSTTAEEADAVARELARALQADHRDHVVSEMSKSSRKGKVFIDWSQNNGS
KTTICPYSLRGRMRPTVAAPRTWDEISDPELRHIEYDEVLRRVEEGIDPIAEMGHEPSHT
RGRRGKAEGTRRANRLEKYKSKRDRTRTPEPIPETQVHHDDSESAIESEDPIFVIQEHHA
SSVHWDFRLEHDGVLASWAVPKGPPGAQGVNRLAVATEDHPLEYATFEGTIPKKEYGGGE
VAIWDVGTIDVDKWCEGREVVVTCYGRADGGLGGEPRKFALIHTGEKTGTSGAGNDSHWI
LRLTKHQPQPGRSGTGPSISTPVSPMLATLGSAKDITNSKDWAFEMKWDGVRAVATVTSA
TVILSSRKGHDLTATFPEFGDLGKAIDRRTLNEGDVIVDGEIVAFDAKDRPSFSLLQQRL
GLTTKAKIRSAQERFPAFFMAFDLLACGGRSMLATPYGERRSALREVVDETAHLRIPHAD
PGDVDHAIALSQQLELEGVVAKQLSSVYRPGKRGKTWIKIKNAREQEVVVIGWRHGKGER
SGRIGSLLLAVPDDEGQLHYAGRVGTGFSEKDLDDIARRLRGRERKTAPAAGVPAADRRD
AEWVRADLVAEVRYAERTTEGRLRHPSWRGWRRDKSPNEVTWE
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaacggtaggaaagttgacgtcgaaggccacgaactcaaggtgacgaacctt
gacaaggtcttctacccctcgacgggcacgagcaaggccgatgtgatcgactactacagt
cgaatcgcccccgtaatggtgccccaggcaactcggcgtgctgccactcgcaagcgatgg
gtaaatggtgtcggtacgaaagcggaccccgcgaaggcattttttcgaaagaacctggag
cggtcggcgcccagctgggtgcctcgcgcggacatagaacacaaaaagggtacgtcgacg
tatcccctgattgacgagcgcgcggtgttggtatggctggctcaagtcgcggcgctggag
atacatacgccgcagtggcgattcgacgaagaaaacgagccactcaaccccgatcggctg
gtactcgacctggacccgggcgagggggtcgaactgcgtcaatgtgccgaggttgccgtg
tggtgtcgcgagataatcgacggaatgggcctggacgctttccccgtcacgtccgggtcg
aaaggccttcatatctattcccctctcgacggatccacgaccgctgaggaggcggatgcc
gtggcgcgtgagcttgcgcgagcgctacaggccgaccacagggaccacgtggttagcgaa
atgtccaagtcgagccgcaaggggaaagtcttcatcgattggtcccagaacaacggcagt
aagacgaccatctgtccgtattcgctgcgcggcaggatgcgacctacggtggcggcgccg
agaacctgggatgagatttccgatccggagcttcgccacatcgaatatgacgaagtgctc
cgtcgcgtcgaggaggggatcgaccccatagcggaaatggggcacgagccatcgcacaca
cgaggtcgacgcggcaaagccgaaggaacccggcgggcgaatcgactcgagaagtacaaa
tcgaagcgcgaccgcacccgaacgcccgaacccattcccgaaactcaggtccatcacgat
gacagcgagagcgcgatcgagtcggaagaccctatattcgtcattcaggaacaccatgcc
agctcggtgcattgggattttcgcctcgaacatgacggcgtgctcgcttcgtgggcggtg
cctaaagggcccccgggagctcagggcgtcaatcgcctcgcggtggccaccgaagatcac
ccactggaatacgcgacgttcgaaggcaccatcccgaagaaggagtacggcggcggagaa
gtcgcgatttgggatgtcggcacgatcgacgtcgataagtggtgtgagggccgggaagtc
gtcgttacttgttacggcagggccgacggtggtctcggcggagagccccgaaaatttgca
ttgatccacaccggtgaaaagaccggcacgtcgggcgccggaaatgattcccactggatt
cttcgtctgacaaaacaccagccacaaccggggcgctctgggaccggtcccagcatctca
acgccggtatccccgatgctggcgacattgggaagtgctaaggacatcactaattcgaaa
gactgggcgttcgagatgaaatgggacggtgtgcgagcggttgccacggttacttcggcg
acggtcatcctgagcagccgtaaaggccacgatctcacggctacctttcccgagttcggc
gatctggggaaagcgatagatcggcgcaccttaaacgaaggagacgtcattgtagatggc
gaaatcgtggctttcgacgccaaggatcgcccttccttctccttgctccagcagcgcctt
ggattaacgacgaaggcaaaaatacgttctgcccaagaacgcttccccgcattctttatg
gccttcgacctgcttgcatgcggcgggagatcgatgctggccacgccgtacggtgagcga
cgaagcgcgctccgtgaagtggtcgacgaaaccgctcatcttcggattcctcacgcggac
cctggggacgtcgatcacgcgatagcgctgtctcaacaactcgagttggagggcgtggtg
gcgaagcagctttcgagtgtctaccggccgggcaagcgtggaaaaacgtggatcaagata
aagaatgcccgcgagcaggaagtcgtcgtcattgggtggcggcatggaaaaggagagcgt
tccggtcggatcggttcacttttgctcgccgtgccggatgacgaaggccaactccactac
gcgggccgggtaggcacggggttcagcgagaaagacctcgacgacatcgctcgccggctc
cgcggccgcgaaaggaagacggccccggcagccggcgttcctgcggcggatcgacgcgac
gccgaatgggtgcgcgccgatctcgtggccgaagtcaggtatgccgaacgcacgaccgag
gggcggttgcgtcacccgtcgtggcgcggctggcgtcgcgataagtcccccaacgaggtc
acctgggagtga
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