Candidatus Desulfovibrio trichonymphae: RSDT_0086
Help
Entry
RSDT_0086 CDS
T05578
Symbol
pdxS
Name
(GenBank) pyridoxal biosynthesis lyase pdxS
KO
K06215
pyridoxal 5'-phosphate synthase pdxS subunit [EC:
4.3.3.6
]
Organism
dtr
Candidatus Desulfovibrio trichonymphae
Pathway
dtr00750
Vitamin B6 metabolism
dtr01100
Metabolic pathways
dtr01240
Biosynthesis of cofactors
Module
dtr_M00916
Pyridoxal-P biosynthesis, R5P + glyceraldehyde-3P + glutamine => pyridoxal-P
Brite
KEGG Orthology (KO) [BR:
dtr00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00750 Vitamin B6 metabolism
RSDT_0086 (pdxS)
Enzymes [BR:
dtr01000
]
4. Lyases
4.3 Carbon-nitrogen lyases
4.3.3 Amine-lyases
4.3.3.6 pyridoxal 5'-phosphate synthase (glutamine hydrolysing)
RSDT_0086 (pdxS)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SOR_SNZ
ThiG
Dus
TetR_C_27
NanE
IGPS
NMO
His_biosynth
Motif
Other DBs
NCBI-ProteinID:
BAV91598
UniProt:
A0A1J1DWX8
LinkDB
All DBs
Position
110411..111292
Genome browser
AA seq
293 aa
AA seq
DB search
MKQGTPRLKTGLAEMLKGGVIMDVTTPEQAKIAEGAGACAVMALERVPADIRAHGGVARM
ADPTVVKTIMEAVTIPVMAKARIGHFVEARILEALGVDYIDESEVLTPADDRHHIDKRGF
TVPFVCGCRNLGEALRRIAEGAAMIRTKGEPGTGNVVEAVRHCRQVMDEIRSLCALPEDE
VANFAKECGAPLEAALAVRRKDRLPVVNFAAGGIATPADAAMMMHLGCDGVFVGSGIFKS
GDPAKRARAIVQAVTNYRDYTMLAEISRDLGEAMVGIEISAITPAERMQERGW
NT seq
882 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagggcaccccgcgtctgaaaacaggtttggccgaaatgctcaagggcggtgtc
atcatggacgtcaccacgcctgaacaggcgaaaatcgccgaaggcgcgggtgcctgcgcc
gtgatggcgttggagcgcgttcctgcggatattcgcgcgcacggcggcgtggcccgtatg
gctgacccgactgttgtcaaaacaattatggaggccgtgaccattcctgtcatggccaag
gcgcgcataggccattttgttgaggcgcgcattctggaagccctcggcgttgattatatt
gatgaaagcgaagtgctgactccggccgatgatcggcaccatattgacaaacgcggcttt
acagtgccctttgtctgcggctgccgcaacttgggcgaggcgttgcggcgtattgccgaa
ggcgctgccatgatacgcaccaagggcgagccgggcaccggcaatgtggtagaagcggtt
cgtcactgccggcaggtgatggatgaaattcgctcgctgtgtgccctgcccgaagacgaa
gtggctaatttcgccaaagagtgcggcgcgccgctggaagcggcccttgccgtgcgcagg
aaggaccgtttgcctgtggtcaatttcgccgcgggcggcatcgcgacgccggcggacgct
gccatgatgatgcacctcggctgcgacggcgtttttgtgggatccggcatattcaagtcc
ggcgacccggcaaagcgcgcgcgggccattgtgcaggccgtgacaaactacagggactac
actatgttggccgaaatctcacgggatcttggcgaagccatggtcggcatagaaatctcc
gccatcacacccgcggagcgtatgcaggaacgcggctggtag
DBGET
integrated database retrieval system
