Duganella dendranthematis: HH213_06120
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Entry
HH213_06120 CDS
T06560
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
dug
Duganella dendranthematis
Pathway
dug02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
dug00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HH213_06120 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dug03021
]
HH213_06120 (rpoD)
Transcription machinery [BR:
dug03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HH213_06120 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GerE
GAD
Motif
Other DBs
NCBI-ProteinID:
QJD89715
LinkDB
All DBs
Position
complement(1320155..1322398)
Genome browser
AA seq
747 aa
AA seq
DB search
MPIKKPESKAAEKPAKVSAKSAKTADKPETRVASNPPAVSQTTDAATLAAIDTSGYVLPS
VKVPGRRGRKPKEFQPENDEVAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTE
ATEEELERRRQKLKTLIKFGKERGFLTYAEINDHLPDNIVDPEAIEGIIGTFNDMGIAVY
EHAPDAETLLLSDNVATVTSDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLT
REGEIEIAKRIEDGLKDMIQAISACPVTIAEIIAASDRIRADEIKIDEIVDGLVDDNEDA
PPAPAPAASDEDEEEEEEEEEEEEEEEEASASGAAAGYSAEQLEAMKNAALDKFDTISLQ
FDKMRRAFEKEGYNSKAYVKAQEAISSELLGIRFTAKVVEKLCDTLRGQVDEVRHIEKQI
LDVAVNKCGMPRAHFIKVFPGNETNLEWVDGEVAAGHAYSAILGRNIPTIKELQQRLIDL
QARVVLPLPDLRNINRQMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQE
GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRIS
RQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNN
TLAPSDAALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERI
RQIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
gtgccaatcaagaaacctgaatccaaagcggctgaaaagccagctaaagtgagcgcaaaa
tccgctaaaacggctgataagccggagacgcgtgttgccagcaatccgccggcggtcagc
cagaccaccgacgcggcgacgctggcagccatcgacacgtcgggttacgtgttgccttcg
gtcaaagtgccgggccggcgcgggcgcaaacctaaagaattccaacccgagaacgacgaa
gtcgccgcactcaacgcggtcgaacgcgccgagctgaaggcggtcgacaaggccaaggcc
aaggaccgcaaggccaaggaaaaagcgctgctcaaagatgcgttctcgtcggatacggaa
gcgaccgaggaagagctcgaacgccgccgccagaaactcaagaccctgatcaagttcggc
aaggaacgcggtttcctcacgtacgccgagatcaacgaccatctgccagacaatatcgtc
gatccggaagcgatcgaaggcattattggcaccttcaacgacatgggcatcgccgtctac
gagcacgcgcccgatgccgagacgctgctgctgtccgacaatgtcgccaccgtgaccagc
gatgacgaagccgaggccgccgccgaagcggcgctgtccaccgtcgattccgatttcggc
cgcactaccgacccggtccgcatgtatatgcgcgaaatgggttcggtcgagctgctgacc
cgtgaaggcgagatcgaaatcgccaagcgcatcgaagatggcctaaaggacatgatccag
gcgatttcggcctgcccggtgacgatcgcggaaatcatcgccgcgtccgaccgcatccgc
gccgatgagatcaagatcgacgaaattgtcgacggtctggtagacgataacgaagacgcg
ccgccggcgccggcgcccgccgccagcgacgaggacgaagaagaagaggaagaagaggaa
gaggaagaagaggaagaggaagaagccagcgcttcgggcgctgccgccggctactcggcc
gaacagctggaagcgatgaaaaacgctgcgctggataaattcgacaccatctccctgcaa
ttcgacaagatgcgccgcgccttcgagaaggaaggctacaactccaaggcctacgtcaag
gcgcaggaagcgatttcctcggaactgctgggcatccgcttcaccgccaaagtggtagaa
aagctgtgcgacacgctgcgcggccaggtagacgaagtgcgtcacatcgagaagcaaatt
ctcgacgtggcggtgaacaagtgcggtatgccgcgcgcgcactttatcaaagtattcccg
ggcaatgaaaccaatctggaatgggtcgatggcgaagtggccgccggccacgcctacagc
gccatcctgggccgtaacattccgaccatcaaggaactgcaacagcgcctgatcgacctg
caagcgcgcgtggtgctgccgctgccggacttgcgcaacatcaaccgccagatggcggcc
ggtgaaatgaaggcgcgcaaggccaaacgcgaaatgaccgaggccaacttgcgcctggtg
atctcgatcgccaagaagtacaccaaccgcggcctgcaattcctcgacctgatccaggag
ggcaacatcggcctgatgaaggcggtggacaagtttgaataccgtcgcggctacaagttc
tcgacgtatgcgacgtggtggatccgtcaggccatcacccgttcgatcgccgaccaggcg
cgcaccatccggattccggtgcacatgatcgagaccatcaacaagatgaaccgcatctcg
cgccagatcctgcaagagaccggcgccgagccggacccggcgacgctggccatcaagatg
gaaatgccagaggacaagatccgcaagatcatgaagatcgccaaagagccgatctcgatg
gaaacgccgatcggcgacgacgacgattcgcatctgggcgacttcatcgaggacaacaac
acgctggcgccgtccgacgccgcgctgcacgcgtcgatgcgtggcgtggtcaaggatgtg
ctggactcgttgacgccgcgcgaagccaaggtgctgcgcatgcgcttcggcatcgaaatg
tcgaccgaccacacgctggaggaggttggtaagcagttcgacgtcacgcgtgagcggatt
cgccagatcgaagccaaggccttgcgcaagctgcgtcacccgagccgctcggacaagctg
aagagtttcctggaaggtaactaa
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