KEGG   Drosophila yakuba: Dyak_GE21462
Entry
Dyak_GE21462      CDS       T01068                                 
Symbol
Dyak_Rpd3
Name
(GenBank) Rpd3
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
dya  Drosophila yakuba
Pathway
dya03082  ATP-dependent chromatin remodeling
dya03083  Polycomb repressive complex
dya04213  Longevity regulating pathway - multiple species
dya04330  Notch signaling pathway
dya04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:dya00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    Dyak_GE21462 (Dyak_Rpd3)
   03083 Polycomb repressive complex
    Dyak_GE21462 (Dyak_Rpd3)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    Dyak_GE21462 (Dyak_Rpd3)
   04350 TGF-beta signaling pathway
    Dyak_GE21462 (Dyak_Rpd3)
 09150 Organismal Systems
  09149 Aging
   04213 Longevity regulating pathway - multiple species
    Dyak_GE21462 (Dyak_Rpd3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:dya03036]
    Dyak_GE21462 (Dyak_Rpd3)
Enzymes [BR:dya01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     Dyak_GE21462 (Dyak_Rpd3)
Chromosome and associated proteins [BR:dya03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     Dyak_GE21462 (Dyak_Rpd3)
   HDAC complexes
    Sin3A-HDAC complex
     Dyak_GE21462 (Dyak_Rpd3)
    BRAF-HDAC complex
     Dyak_GE21462 (Dyak_Rpd3)
    REST complex
     Dyak_GE21462 (Dyak_Rpd3)
    SHIP complex
     Dyak_GE21462 (Dyak_Rpd3)
    MiDAC complex
     Dyak_GE21462 (Dyak_Rpd3)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     Dyak_GE21462 (Dyak_Rpd3)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    Dyak_GE21462 (Dyak_Rpd3)
  Chromatin remodeling factors
   NuRD complex
    Dyak_GE21462 (Dyak_Rpd3)
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-ProteinID: EDW93443
FlyBase: FBgn0238719
UniProt: B4PIA1
LinkDB
Position
3L
AA seq 521 aa
MQSHSKKRVCYYYDSDIGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKATAD
EMTKFHSDEYVRFLRSIRPDNMSEYNKQMQRFNVGEDCPVFDGLYEFCQLSAGGSVAAAV
KLNKQASEICINWGGGLHHAKKSEASGFCYVNDIVLGILELLKYHQRVLYIDIDVHHGDG
VEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNIPLRDGMDDDAYESIFV
PIISKVMETFQPAAVVLQCGADSLTGDRLGCFNLTVKGHGKCVEFVKKYNLPFLMVGGGG
YTIRNVSRCWTYETSVALAVDIANELPYNDYFEYFGPDFKLHISPSNMTNQNTSEYLEKI
KNRLFENLRMLPHAPGVQIQAIPEDAINDESDDEDKVDKDDRLPQSDKDKRIVPENEYSD
SEDEGEGGRRDNRTYKGQRKRPRLDKDTNSNKASSETSSEIKDEKEKGDGADGEESTASN
TNSNNNSNNKSDNDAGATANAGSGSGSGSGAGAKGAKENNI
NT seq 1566 nt   +upstreamnt  +downstreamnt
atgcagtctcacagcaaaaagcgcgtttgttactactacgacagtgacattggcaactac
tactatggccagggtcatcccatgaagccgcaccgcatacgcatgacccacaacctgctg
ctcaactatgggctgtatcgtaaaatggaaatataccgtccccataaagccactgccgat
gagatgaccaagttccactcggacgagtacgtccggttcctgcgttccattcggccggac
aacatgtccgagtacaacaagcagatgcagcgtttcaatgtgggcgaggattgtcccgtc
tttgatggactctacgagttttgccaactctccgccggcggatccgtagccgcggccgta
aaactgaataagcaagcctcggagatctgcatcaattggggcggtggactgcatcatgcc
aagaaatcggaggcatccggcttctgctacgtcaacgatattgtgctgggtattttggag
ctgctgaaataccaccagcgtgttctgtacatagatatagacgttcatcacggcgatggt
gtggaggaggcgttctataccaccgatcgtgtgatgacggtgagcttccacaagtacgga
gagtatttcccgggcaccggcgatctgcgagacattggcgccggcaagggcaagtactat
gcggtgaatatacccctgcgtgatggcatggacgatgatgcgtacgagagcatctttgtg
cccattatcagcaaggtgatggagacattccagccggcagccgtggtgctgcagtgtggc
gccgactcgctgactggcgatcggttaggttgcttcaatctcaccgtcaagggacacggc
aagtgcgtggagtttgtgaagaagtataacctgcccttcctgatggtcggcggtggtggt
tataccattcgtaacgtatcccgttgctggacctatgagacctccgtggccctggccgtg
gatatagccaacgaactgccctacaacgattacttcgagtactttggtcccgatttcaag
ctgcacattagccccagcaacatgacgaatcagaatacctcggagtacctggagaagatc
aagaatcgtctgttcgagaacctgcgcatgctgccacacgctccgggcgttcaaatccag
gcgatacccgaggacgccatcaatgatgagtccgacgacgaggacaaggtcgacaaggac
gatcgcctgccgcagagcgacaaggacaagcgcattgtgcccgagaatgagtactccgat
tcggaggatgagggcgagggcggtcgcagggataaccgcacgtacaagggtcagcggaag
cgaccgcgtctggacaaggacaccaacagcaacaaggcatcctcagagacgtccagcgag
atcaaggacgaaaaggaaaagggcgatggcgctgatggcgaggagtcgacggcgtccaat
acgaatagcaacaacaacagtaacaacaagagcgataacgacgccggagcgacagctaat
gccggatccggatcgggttcaggttccggtgccggggccaagggcgccaaggagaacaac
atttga

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