Ensifer adhaerens Casida A: FA04_14840
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Entry
FA04_14840 CDS
T04507
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
eah
Ensifer adhaerens Casida A
Pathway
eah03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
eah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FA04_14840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eah03400
]
FA04_14840
Enzymes [BR:
eah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FA04_14840
DNA repair and recombination proteins [BR:
eah03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FA04_14840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_primase_S
FlaA
Motif
Other DBs
NCBI-ProteinID:
ANK73785
LinkDB
All DBs
Position
3026270..3027895
Genome browser
AA seq
541 aa
AA seq
DB search
MASLRSPLAEYNKRRNFGETREPKGKLGRGRSGRMRFLVQKHDATRLHYDLRLEWDGVLK
SWAVTRGPSLNPEDKRLAVRTEDHPLAYGDFEGTIPEKQYGGGTVMLWDSGWWEPENDPD
EGLREGKLTFHLHGQRMQGGWALVRMRSRPGEKRENWLLIKEGDEIAAEDGNVLLENHLT
SVSTGRTMAEIADGKGERKKHVWTSKGEDKEAKAVTVKTSKTATKPKDKAAKPAKAKQAI
SDETVLGVRITHPDRVLFADQGISKLDLARYYAVVADRILPHAAERLLSLVRAPQGVKGP
RFYQKHASDGFPDEIKEVPVEESSGETENYMYVRDAKGLVAAVQMGTLEFHIWGSHVDKL
EIPDRLVFDLDPDEGLDFEMVKGAAVALRDALDEIGLKSAPMVTGGKGVHVIVPLTARAS
WPEAKAFAKTFAQGFADREPDRFIATMSKEKRKGRIFIDWLRNERGATAIAPYSTRARAD
GPVATPINWDELADLKSANSFHIPDILERIENGADPWQDVSKIRQSLTKTILGKIGVNEA
D
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcccttcgcagcccgcttgccgaatacaacaaacgccgcaacttcggcgagacg
cgcgaaccaaagggcaagcttggtcgcggccggtccggccgcatgcgctttctcgtgcag
aagcatgacgccacccggctccactacgacttgcggctggaatgggacggtgtcttgaag
agctgggcggtcacccgcggaccaagcctcaatccggaagacaagcgactagctgtcaga
accgaggatcatccgctggcctatggcgatttcgaaggcacaatccccgaaaagcaatat
ggcggcggcaccgtcatgttgtgggacagcggctggtgggagccggaaaacgatccggac
gagggcttgcgcgagggcaagctgacattccatcttcacggtcagcggatgcaaggcggg
tgggcattggtgcggatgcggtcacgccccggtgaaaagcgcgagaactggctgctgatc
aaggagggtgacgaaattgccgccgaggatggcaacgttctgctggagaaccatctgacg
agcgtcagcaccggccgcaccatggccgagattgccgatgggaagggcgaacgcaagaag
catgtctggacctcaaagggggaggacaaggaggcgaaggccgtgacagtcaaaacatcc
aaaaccgcaacgaagcccaaggacaaagcagcaaagccggcaaaggcgaagcaagccata
tcggacgaaaccgtgcttggggtgcgcatcactcatccggatcgcgtcctgtttgctgac
cagggcatcagcaagctcgatctcgcccgctactacgccgtcgtcgccgatcgcatattg
ccccatgccgccgagcgtctcctgtcgctcgtgcgtgcgccgcagggcgtgaagggtccg
cgcttctaccagaaacatgcgagcgacggttttcccgacgagatcaaggaagtccccgtc
gaggaaagctccggcgaaacggaaaactacatgtatgtgcgcgacgccaaggggctggtc
gctgcggtccagatgggcacgctggagttccatatctggggatcgcatgtcgacaagctg
gagatccccgatcgactggtcttcgaccttgatcctgacgagggtctcgacttcgagatg
gtcaagggtgcggccgtggccttgcgcgatgcgctcgatgagatcgggctgaaatcggct
ccgatggtcacgggcggcaagggcgtccatgtcatcgtgccgctgacggcccgcgccagc
tggccggaagccaaggccttcgccaagacctttgcgcaaggtttcgccgatcgcgaaccg
gaccggttcatcgccaccatgtcgaaggaaaagcgcaaaggacgcatcttcatcgactgg
ctgaggaatgagcgcggcgcgaccgccattgccccctactcgacccgggcgcgcgctgac
ggaccggtggcgacgcccatcaactgggatgaacttgccgatctcaagtcggccaacagc
ttccacatcccggacatcctcgagcggatcgaaaatggcgcagacccctggcaggatgtg
tccaagatcaggcaatccctgaccaagacgatcctgggcaagatcggcgtgaacgaggcg
gactag
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