Exiguobacterium sp. AT1b: EAT1b_1685
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Entry
EAT1b_1685 CDS
T00897
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
eat
Exiguobacterium sp. AT1b
Pathway
eat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
eat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EAT1b_1685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eat03400
]
EAT1b_1685
Enzymes [BR:
eat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EAT1b_1685
DNA repair and recombination proteins [BR:
eat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EAT1b_1685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
MFD_D3
RecG_dom3_C
AAA_22
IstB_IS21
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ACQ70611
UniProt:
C4KZU8
LinkDB
All DBs
Position
complement(1634651..1638178)
Genome browser
AA seq
1175 aa
AA seq
DB search
MNALERFMVALPETNVIRERLQKVDRQLVTGLTTSAKALVLAGLVKSSSRRLVVVTHNMY
QAQKMFDQLESLIGPDKTLLYPIDETLAGELSLTSSPELLAARIDARTRLLDQTGGVVVV
PLGGLRRYVPSPEAWQDSRVMLKPGSDLDLADFAKQLTGMGYERTATVTTPGEFSVRGSI
LDVYPLTEARPYRIDLFDTEIDSIFTFDAETQRSLGVVGEVCITPATEFIATENQLKQAG
GALRKQYDRTVELIGNEVIRQALEEGVVTDIERLERGDLPEKVGKYSPLLYTSTLLDYVG
KDAVLILDEVARIDDAADVQDREEAEWFSSLIEKGEAVSNYTLAVPMHKVFRDLKQVAFS
LLPSRRSGIPESDTVHLSCRPLPAFHGQMHLLKQEVERWQQGDQRIVVLAGDKSRADKIE
ALLSDYGIASTFTNVDGELEPRRVSVIIGQIEGGFELSTSRLVVVSEEELFKRVTKRKRQ
TKNLTNAERIKSYQELKPNDYVVHVHHGIGKYLGIKTIEVGGIHQDYLHLVYAGDDALYV
PVDQIDLVQKYVGAEGKEPKIYKLGGTEWKKVKSKVAKSVKDIADELIKLYAAREASVGF
AFPPDDEEMGQFESSFPYAETEDQVRSIAEIKADMERSRPMDRLLCGDVGYGKTEVAIRA
AFKAVLAGKQVAFLVPTTVLAQQHYETMLERFSEFPINVSVMSRFRSKSEMTATKKGLKE
GTIDIVVGTHRVLSKDVTFANLGLVIIDEEQRFGVKHKERLKQLKTNIDVLTLTATPIPR
TLHMSMIGIRDLSVLETPPENRYPVQTYVMEYDGIVLREALERELARGGQAFFLYNRVEG
IERKAEEIRALLPDARIATAHGRMTESELESQLISFLEGEADILVSTTIIETGIDIPNVN
TLIVHDADKMGLSQLYQLRGRVGRSNRIAYAYFTYRKDKRLTEVAESRLQAIKEFTELGS
GFKIAMRDLSIRGAGNLLGAQQSGFIDSVGFDLYSQMLSEAIEERKDRMRGQAKQVVFKP
EITFQADAYIPDDYLSDSELKIEMYKRFKYVDTPSALFALQDELIERFGEFPEPVALLIQ
LTRLRIYGELAKVSRIKQTPGRIEIVLSKESTTALDVPSFMEWSMPLGRKLGVGQEDGAL
KLSLSGRMPLTELLNDADTVLEELMKRLVGDAVAK
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctttagagagatttatggtggcgctccctgaaacgaatgtgattcgagagcga
ctccaaaaagtggaccgtcaattggtgacgggattgacgacaagcgcgaaagccctcgtc
ttggcgggactcgtgaaatcgtcatcgagacgtctcgtcgtcgtgacgcataacatgtat
caagcccaaaagatgttcgatcaacttgaatcactcatcggtccggacaaaacgctctta
tatccaatcgatgagacgctagcaggtgaactgtcactgacgtctagtccggaactgcta
gctgcccgaatcgatgcccgtactcgtctcctcgatcaaacaggaggcgttgttgtcgtg
ccgcttggtggattacgacgctatgtaccgagtccggaagcgtggcaagatagtcgcgtt
atgttaaagccgggaagtgacctcgatttagcggattttgcgaaacaattgacgggcatg
ggctacgaacgaacggcaacggtgaccacacctggtgaattttccgtacgagggagcatt
ctagacgtttatcctcttacggaagcgcgcccatatcgaatcgatttgttcgacaccgag
attgactccattttcacgtttgacgcggaaacgcaacgctcgcttggtgtagtgggagaa
gtgtgcattacgcctgcgaccgagttcatcgcaacggagaatcagctgaagcaggcgggc
ggtgcgcttcggaaacagtacgaccgaaccgtcgaattgattggaaatgaagtcatccgt
caagcccttgaagaaggagtcgtgacagacatcgagcggcttgagcgtggagacctcccg
gagaaagttgggaagtattcgccattgctctatacgtccacgctccttgactacgttggg
aaagacgccgtcctcattttagatgaggtggcacgaatcgatgacgctgccgacgtacag
gaccgcgaagaggcggaatggttctcttcactcattgaaaaaggagaagccgtcagtaat
tacacgctcgccgtcccgatgcataaagtcttccgcgacttgaagcaagtggcgttctcc
ttgcttccgtctcgtcgttcgggtattccggagagcgatacggtccatttgagctgtcgt
ccgctaccggcgttccatggtcagatgcatctattgaaacaggaagtcgagcgatggcag
caaggtgatcaacgcatcgtcgtactggcgggagataagtcgcgtgcagataaaatcgaa
gcgcttctttccgactatggaatcgcctcgactttcaccaatgtcgatggagagttagaa
ccgagacgtgtctcggtcatcatcggtcaaatcgaaggtggattcgaactgtcgacgagc
cgtctcgttgtcgtatcggaagaagagttgttcaagcgtgtgacgaaacgaaaacgtcag
acgaagaatttgacgaacgccgaacgaatcaagagttaccaagagctgaagccgaatgat
tatgtcgtccatgtacaccatggaatcgggaagtaccttggcattaaaacaatcgaggtc
ggtgggatccatcaggattacctgcacctcgtctatgcaggggacgacgccctctacgtg
ccggtcgaccaaatcgatctcgtccaaaaatatgtcggggccgaaggcaaagagccgaag
atttataaactcggcggcaccgagtggaagaaagtaaaatcgaaagttgccaaatcggtt
aaagatattgccgatgagctcattaaattgtacgcggcacgagaggcctcggtcggtttc
gcgttcccgccggacgatgaagagatgggtcagttcgaatcttctttcccgtacgccgag
acagaagatcaggtgcgttcgattgcagaaatcaaggcggatatggaacgctcccgtccg
atggatcgccttttatgtggagatgtcggatacgggaagacggaagtggcgattcgggcg
gcgttcaaagccgtgctcgccggcaaacaagtggcatttcttgtcccgacgaccgtcctc
gcccaacagcattatgaaacgatgcttgagcggttcagcgaattcccgattaacgtatcg
gtcatgagtcgtttccgttcgaagagcgagatgaccgcgacgaagaaagggttgaaagaa
ggtaccatcgacatcgtcgtcgggacacaccgcgtgttgtcaaaagacgtgacgttcgcc
aacctaggtctcgtgatcatcgatgaagaacaacgctttggcgtcaaacataaagagcgt
ctgaagcagctgaagacgaacatcgatgtcctgacgctgacggcgactccgattccacgg
acattgcatatgtcgatgatcggaatccgtgatttgtccgtattagagacaccgccagag
aatcgttatcctgtccaaacatacgtcatggaatacgacggcatcgtcttgcgtgaagcg
ctcgaacgtgaactcgctcgcggaggacaggcgttcttcctctataaccgcgtcgaagga
atcgaacgaaaagcggaagagattcgggccttattgcccgatgcacgaattgcaacggca
catggacgcatgacggaaagtgagctcgagagtcagttgatcagcttcctagagggcgag
gcggatattttagtctcgacgacaatcatcgagacaggaatcgacattccaaacgtcaac
accctcatcgtccacgatgcagacaagatggggctgtcccagctctaccaactccgaggt
cgtgtcggacgttcgaatcgaatcgcctatgcgtacttcacgtatcggaaagataagcgc
ttgacggaagtggcagaaagtcgtcttcaagccatcaaagagttcacggagctcggcagt
gggtttaagattgcgatgcgcgacttgtcgattcgcggagccggaaacttactcggtgca
caacagtctggattcatcgattcggtcggttttgacctgtactcacaaatgctctctgaa
gccattgaggaacggaaagaccgtatgcgtggacaagcgaaacaagtcgtcttcaaaccg
gagatcacgttccaggccgatgcgtatattcctgatgactacttgtcagatagcgaattg
aagattgagatgtacaaacgcttcaaatatgtagatacgccgagcgcgttgttcgccctt
caagatgaactgattgaacggtttggtgaattcccagaaccggtcgcgctgctcattcaa
ttgacacgtctacgtatttatggagaactggcaaaagtgagtcgaatcaagcagacgcca
ggacgcatcgagattgtcttatcgaaagaatcgacgacggctctggatgtcccgtccttc
atggaatggtcgatgcctcttggtcgcaagcttggggtagggcaagaagacggcgccttg
aaactgtcactcagcggtcggatgccgctaacagagctcttgaatgatgccgatactgta
ttagaagaactgatgaagcggttggtgggcgatgcggtcgccaagtaa
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