KEGG   Erigeron canadensis (horseweed): 122581263
Entry
122581263         CDS       T07610                                 
Name
(RefSeq) histone deacetylase 9 isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ecad  Erigeron canadensis (horseweed)
Pathway
ecad03082  ATP-dependent chromatin remodeling
ecad03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    122581263
   03083 Polycomb repressive complex
    122581263
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ecad03036]
    122581263
Enzymes [BR:ecad01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     122581263
Chromosome and associated proteins [BR:ecad03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     122581263
   HDAC complexes
    Sin3A-HDAC complex
     122581263
    BRAF-HDAC complex
     122581263
    REST complex
     122581263
    SHIP complex
     122581263
    MiDAC complex
     122581263
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     122581263
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    122581263
  Chromatin remodeling factors
   NuRD complex
    122581263
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 122581263
NCBI-ProteinID: XP_043609384
LinkDB
Position
9:31546440..31551927
AA seq 430 aa
MKSKDKISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLQRINPDTQHLFPEEMKKFKLGEDCPVFDDLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGNLFFPGSGDVKEIGEREGKFYAINVPLKDGIDDSSFTRLFRT
IIAKVVETYQPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFGLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPDNDYIKYFAPECSLRIPTGYIENFNSKSYLSTIK
MQVMENLRAIQHAPSVQMQEVPPDFYIPDFDEDENNPDERNDQRTQDRQIQRDDEYYEGD
NDNDHNMDDS
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgaagtcaaaagacaaaatttcatacttttatgacggggatgttgggaatgtttacttt
ggaccgaaccatccaatgaagccgcatcggttatgtatgactcatcatttggtgctttca
tatgatcttcataagaagatggaaatttataggcctcataaggcatatccagttgagcta
gctcagttccattcggctgattatgtggagttcctgcagcggataaatccggacactcaa
catttgtttccagaggaaatgaagaagtttaaacttggagaagattgtcctgtctttgat
gacttgtttgaattttgccaaatctatgctggtggtactattgatgctgcacgcagatta
aacaatcagctttgtgacattgccataaattgggctggggggttacaccatgctaaaaag
tgcgaggcatctggattttgctacatcaatgacttggttttgggcattttggagcttctc
aagtatcatgcacgggttttgtatattgatatagatgttcatcatggtgatggtgtagaa
gaagccttttacttcactgacagggtgatgactgttagctttcacaagtatggaaatttg
ttctttcctggatcaggagatgttaaggaaattggggaacgagaagggaagttttatgca
attaatgttcctttgaaggatggcatagatgactccagctttactcgtttgtttagaaca
atcattgcaaaagttgttgaaacttatcaacctggtgtgatagttctacagtgcggggca
gattcacttgctggggatcgtttaggctgcttcaacctctctatagatgggcatgctgaa
tgtgtcaggtttgtaaagaagttcggtttgcccctgctggtcactggaggcggaggatat
accaaagagaatgttgctcggtgctggactgttgaaacaggagttcttttagacacagag
cttcctaatgagatcccagataacgactatatcaagtattttgctccggagtgttcatta
aggatccctactggttatattgaaaatttcaatagcaagtcgtacctaagcaccataaag
atgcaagttatggaaaatctacgtgccattcagcatgcccccagtgtacaaatgcaagag
gttccacctgatttctatattcccgattttgatgaagatgagaacaaccctgatgaacga
aatgatcaacgcactcaagacaggcaaattcaacgtgatgatgaatactatgaaggagac
aatgacaatgatcataacatggatgacagttag

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