Erigeron canadensis (horseweed): 122581263
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Entry
122581263 CDS
T07610
Name
(RefSeq) histone deacetylase 9 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03082
ATP-dependent chromatin remodeling
ecad03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122581263
03083 Polycomb repressive complex
122581263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecad03036
]
122581263
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
122581263
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
122581263
HDAC complexes
Sin3A-HDAC complex
122581263
BRAF-HDAC complex
122581263
REST complex
122581263
SHIP complex
122581263
MiDAC complex
122581263
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
122581263
Heterochromatin formation proteins
Other heterochromatin formation proteins
122581263
Chromatin remodeling factors
NuRD complex
122581263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
122581263
NCBI-ProteinID:
XP_043609384
LinkDB
All DBs
Position
9:31546440..31551927
Genome browser
AA seq
430 aa
AA seq
DB search
MKSKDKISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLQRINPDTQHLFPEEMKKFKLGEDCPVFDDLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGNLFFPGSGDVKEIGEREGKFYAINVPLKDGIDDSSFTRLFRT
IIAKVVETYQPGVIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFGLPLLVTGGGGY
TKENVARCWTVETGVLLDTELPNEIPDNDYIKYFAPECSLRIPTGYIENFNSKSYLSTIK
MQVMENLRAIQHAPSVQMQEVPPDFYIPDFDEDENNPDERNDQRTQDRQIQRDDEYYEGD
NDNDHNMDDS
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcaaaagacaaaatttcatacttttatgacggggatgttgggaatgtttacttt
ggaccgaaccatccaatgaagccgcatcggttatgtatgactcatcatttggtgctttca
tatgatcttcataagaagatggaaatttataggcctcataaggcatatccagttgagcta
gctcagttccattcggctgattatgtggagttcctgcagcggataaatccggacactcaa
catttgtttccagaggaaatgaagaagtttaaacttggagaagattgtcctgtctttgat
gacttgtttgaattttgccaaatctatgctggtggtactattgatgctgcacgcagatta
aacaatcagctttgtgacattgccataaattgggctggggggttacaccatgctaaaaag
tgcgaggcatctggattttgctacatcaatgacttggttttgggcattttggagcttctc
aagtatcatgcacgggttttgtatattgatatagatgttcatcatggtgatggtgtagaa
gaagccttttacttcactgacagggtgatgactgttagctttcacaagtatggaaatttg
ttctttcctggatcaggagatgttaaggaaattggggaacgagaagggaagttttatgca
attaatgttcctttgaaggatggcatagatgactccagctttactcgtttgtttagaaca
atcattgcaaaagttgttgaaacttatcaacctggtgtgatagttctacagtgcggggca
gattcacttgctggggatcgtttaggctgcttcaacctctctatagatgggcatgctgaa
tgtgtcaggtttgtaaagaagttcggtttgcccctgctggtcactggaggcggaggatat
accaaagagaatgttgctcggtgctggactgttgaaacaggagttcttttagacacagag
cttcctaatgagatcccagataacgactatatcaagtattttgctccggagtgttcatta
aggatccctactggttatattgaaaatttcaatagcaagtcgtacctaagcaccataaag
atgcaagttatggaaaatctacgtgccattcagcatgcccccagtgtacaaatgcaagag
gttccacctgatttctatattcccgattttgatgaagatgagaacaaccctgatgaacga
aatgatcaacgcactcaagacaggcaaattcaacgtgatgatgaatactatgaaggagac
aatgacaatgatcataacatggatgacagttag
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