Erigeron canadensis (horseweed): 122586508
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Entry
122586508 CDS
T07610
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122586508
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ecad03041
]
122586508
Enzymes [BR:
ecad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
122586508
Spliceosome [BR:
ecad03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
122586508
Complex C
U4/U6.U5 tri-SnRNP related factors
122586508
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
AAA_22
DEAD
AAA_19
nSTAND3
AAA_30
PWI
T2SSE
SRP54
TsaE
AAA_7
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
122586508
NCBI-ProteinID:
XP_043614426
LinkDB
All DBs
Position
2:41054808..41064878
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AA seq
1046 aa
AA seq
DB search
MGSDLKTWVSDKLMSLVGYSQPTLVQYVISISKKASTPSDILNSLKDMDVPSSNDTRAFA
EEIFKKVDRKSSGTNVYRQQEEAAAMLARKQRTYKLLEADDDDNAERGPSVSVASQSKKT
DKHVKRFRKKSENQDDDDEGAGVLKQDRRVKQKVSHDESEDSDSEEERLRDQKEREELER
HLREKDAARTAKLTEQKLSMREEEEAIRRANALEEDDIGTLRKVSRQEYLKKREQKKLEE
IRDDIEDEQYLFGDVKVTEAEQRELRYKKKIYELVKKRSQEDDNVNEYRMPDAYDEEGGV
NQEKRFAVAMERYRDSKDGDKMNPFAEQEAWEDHQIKKATLSYASKNKKQSDDYDFVFED
QIEFIHGQVMGGENIDDKVDEEEHEKSIAKTAHEKLLADRKTLPVYPYRESLLKAVEEHQ
VIVIVGETGSGKTTQIPQYLHEAGYTKRGMIGCTQPRRVAAMSVAARVSQEMGVKLGHEV
GYSIRFEDCTSDKTVLKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLSTDILFGLVK
DIARFRPDLKLLISSATLDAEKFSDYFDSAPIFRIPGRRYPVEILYTKAPEADYLDAAIV
TALQIHVTQPPGDGDILVFLTGQEEIETAEEILKHRTRGLGSKIAELIICPIYANLPTEL
QAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVIDPGFVKMKSYNPRTGMESLLITPIS
KASANQRAGRSGRTGPGRCHRLYTAYNYFNDLDDNTVPEIQRTNLANVVLSLKSLGIHDL
LNFDFMDPPPAEALLKALELLFALSALNKHGELTKVGRKMAEFPLDPMLSKMIVASEKYK
CSDEVISIAAMLSIGSSIFYRPKDKQVHADNARLNFHMGNVGDHIALLKVYSSWKETNFS
TQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNPGDLEGIKKAITSGYFPHSAKM
QKNGTYRTVKHPQTVYIHPSSGLAQVLPRWVVYHELVLTTKEYMRQVTELKPEWLVEIAP
HYYQLKDVEDLASKKMPRGEGRAVKD
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atggggagtgacttaaagacgtgggtttcagacaaattgatgtcccttgttggatattca
caaccaacgctagtccaatatgtgattagcatatctaagaaagcttcaactccttctgat
atattaaacagtcttaaagatatggacgtgccatcttccaatgacacccgtgcatttgct
gaagaaatattcaaaaaagttgaccgtaagagttctggaacaaatgtctatagacaacaa
gaagaggctgcagcaatgctagccagaaagcagaggacttacaagctattggaggcagac
gacgacgacaatgctgagcgtggcccttctgtttctgttgcttctcaatccaaaaagacc
gataaacatgtgaaacggtttagaaagaagagtgaaaaccaagacgatgatgatgagggc
gctggagttttgaaacaagatagacgcgttaaacagaaagtttcccatgatgaatcggaa
gattcagattctgaagaagaaagattgcgtgatcaaaaagaacgagaagagttggagcgt
catctaagggaaaaagatgcagctagaacagcaaagctgactgaacaaaagttgtctatg
agggaggaagaagaagcaattaggagagccaatgccttggaagaagatgatattggtacc
ttaagaaaagtatcgcgccaagaatatctcaagaaaagggagcagaagaaactggaggaa
atcagagatgatattgaagacgaacaatatctatttggggatgtcaaagtcacagaggct
gagcagcgtgaactaagatataaaaagaaaatctacgagctagtcaagaagcgttctcaa
gaggatgataacgttaatgagtatcggatgcccgatgcttatgacgaagaaggtggggtt
aaccaagagaaaagatttgccgtagctatggagcgttatagagactcaaaagatggagat
aagatgaacccgtttgctgaacaagaagcatgggaggatcatcaaattaagaaagcaacc
ctaagttacgcatcaaagaacaaaaagcaatctgatgactacgattttgtatttgaggac
cagattgagttcatacatggacaagtcatgggtggtgaaaatattgatgacaaagtagat
gaggaggaacatgagaagtctatagcaaaaacagcacatgagaagcttctggcagacaga
aaaacattacctgtatatccgtaccgagagtctttgcttaaagctgtggaagagcatcag
gttatcgttattgttggtgagaccggatccggaaagaccactcagataccccaatatctt
catgaggctggttacacgaaacgtggaatgataggttgcacgcaacctagacgtgttgct
gcaatgagtgttgctgcccgagtttcccaggaaatgggagtcaaacttgggcatgaggtt
ggctattcaatacgttttgaagactgtacttctgacaaaacagtgcttaaatatatgact
gatggcatgctgctgcgagagtttcttggtgaacctgatcttgcaagttacagtgtagtg
atggtggatgaggctcatgaaagaacgttatcaactgatatcttgttcggtttagttaag
gatatcgctcgatttcgtcctgatctcaagttgctcatttcgagtgccactctcgacgct
gagaagttcagtgactattttgactctgccccaattttcagaattccgggaagaagatat
cctgtggaaatactatacactaaagcaccggaggctgactacctggatgctgcaattgtc
acagctctccaaatccatgtcactcaacctcctggagatggtgacatacttgtttttctc
actggtcaagaggaaattgaaacagctgaggaaatcctgaaacacagaacacggggacta
gggagtaaaatagcagaacttataatatgtcccatatatgcaaatcttcccaccgagctt
caggcaaaaatatttgagcctactccagaaggggcccgcaaggtggtccttgccactaac
atcgctgaaacatcgttgaccattgacggaataaaatatgtgattgatccaggatttgtc
aagatgaaatcttataaccctcgaacagggatggaatcattgctcattactcccatctca
aaagcatctgcaaatcaaagggcgggtcgatctggacgtacgggtccagggaggtgccac
aggttgtatacagcctacaattattttaatgatttagatgataacactgtcccagagatc
cagaggaccaaccttgccaatgttgtattgagtctaaagagtcttgggatccatgacttg
ttaaatttcgatttcatggacccacctcctgctgaagcattacttaaagctctagagcta
ctgtttgccttaagtgcactcaataaacatggtgaattgacaaaggtgggtagaaagatg
gctgaatttccacttgatccaatgctgtccaagatgattgtggcatctgagaagtataaa
tgttctgatgaggttatttcaattgctgccatgctttccattggaagtagcatcttttat
cgtccaaaagataaacaagtccatgcagacaatgctcgattgaattttcatatgggtaat
gttggtgatcacatagcactgcttaaggtttacagttcttggaaggaaacaaacttctct
actcagtggtgctatgagaactacattcaggtgagaagtatgaagcgtgccagggatata
agagatcagttggagggactattggaaagagttgaaattgaattaacttcaaaccctggt
gatttggaaggaattaagaaggccataacctcagggtactttccccactcagcaaagatg
caaaagaacggaacctacagaactgttaaacatcctcagactgtctatattcaccccagc
tctggtttagcacaggtacttcctaggtgggtggtataccacgagctagtcctgactact
aaggagtacatgagacaggtcacggaactaaaacccgagtggctcgtggaaatagctcct
cattattatcagctcaaagacgtagaggatttggcatcaaagaaaatgcctcgtggagaa
ggccgtgcagttaaagactga
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