Erigeron canadensis (horseweed): 122588793
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Entry
122588793 CDS
T07610
Name
(RefSeq) histone deacetylase 19
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
ecad
Erigeron canadensis (horseweed)
Pathway
ecad03082
ATP-dependent chromatin remodeling
ecad03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122588793
03083 Polycomb repressive complex
122588793
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ecad03036
]
122588793
Enzymes [BR:
ecad01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
122588793
Chromosome and associated proteins [BR:
ecad03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
122588793
HDAC complexes
Sin3A-HDAC complex
122588793
BRAF-HDAC complex
122588793
REST complex
122588793
SHIP complex
122588793
MiDAC complex
122588793
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
122588793
Heterochromatin formation proteins
Other heterochromatin formation proteins
122588793
Chromatin remodeling factors
NuRD complex
122588793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
122588793
NCBI-ProteinID:
XP_043616932
LinkDB
All DBs
Position
2:complement(30634501..30639405)
Genome browser
AA seq
495 aa
AA seq
DB search
METGGNSLASGPDGVKRKVYYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQNMH
VVKPVPARDKDLCRFHADDYVTFLRGITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQT
YAGGSVGGAVKLNHDYCDIAINWAGGLHHAKKCEASGFCYVNDIVLSILELLKQHQRVLY
VDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYSKGKYYSLNVPLDDGI
DDESYQSLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVKYMRSFN
VPLLLLGGGGYTIRNVARCWCYETGVALGIELEDKMPQHEYYEYFGPDYTLHVAPSNMEN
KNSRQLLDEIRSKLLDNLSKLQHAPSVQFQERPPDTEFPEPDEDQEDDDRRSDDSDMDEN
NESKPFSGRVKRELHDIESKDMDDLKEGERSSARDMDASFAEISLKGSNSGPAPADVKLE
HGSSNKPDQPSEMNL
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggagactggaggcaattctctagcgtctgggccggatggagtgaagagaaaagtgtat
tacttttacgacccggaagtcgggaactactattatggacaaggtcacccaatgaagcca
cacagaattcgcatgacacatgctctactagctcactatggtttactgcaaaacatgcat
gtggtgaaacctgttcctgctagggataaggatctttgtaggtttcacgctgatgattat
gttacttttctaaggggcatcaccccggaaacacagcaagatcagttaaggcagctaaaa
aggtttaatgttggtgaagactgcccggtgtttgacggtctttactccttctgccaaact
tatgcaggaggttctgttggaggggcagtcaagttgaatcacgattactgtgacattgca
ataaattgggcaggtgggctgcatcatgctaaaaaatgtgaggcttctggtttctgttat
gttaatgatatcgtgctgtctatacttgaacttctgaaacagcaccagcgtgtgctatat
gtagatattgacattcatcatggtgatggtgttgaggaggctttctacactactgacagg
gtgatgacggtttctttccataaattcggagattattttcctggtacaggggatattcga
gatattggatattcaaagggaaaatattattctttaaatgttcccctggatgatggtatt
gatgatgagagctatcaatcattgtttaagccgataattggtaaagtgatggaagttttc
agacctggtgcagttgtcttgcaatgtggtgcagactctttatcaggggataggttgggt
tgcttcaatctctcaattaaaggtcatgctgaatgtgtgaaatacatgagatcttttaac
gtacccttactcttgcttggtgggggaggctacacaatacgcaatgttgctcgctgctgg
tgctacgagactggagttgcgcttgggattgagctagaagataagatgcctcaacatgag
tattatgagtactttggtcctgactatactcttcatgttgctccgagtaacatggaaaat
aagaattctcgtcagctactggatgaaatacgatcaaagcttcttgataatctctctaaa
cttcagcatgcaccaagtgtgcaatttcaagagcgaccacctgatacagaattccccgag
ccagatgaagatcaagaggatgacgatcgaagatcagatgattctgatatggatgaaaat
aatgagagtaaacctttctctggacgtgtgaagagggagcttcatgatatcgagtctaaa
gacatggatgatctaaaagaaggtgaacgctctagtgctagagatatggatgcgtcattt
gcagaaatatcccttaagggttcgaattcaggccccgcaccagcagatgtcaaactagaa
catggaagctcaaacaagccggaccagccttctgagatgaatttataa
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