Erigeron canadensis (horseweed): 122605362
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Entry
122605362 CDS
T07610
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
ecad
Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:
ecad00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ecad01009
]
122605362
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ecad03019
]
122605362
03041 Spliceosome [BR:
ecad03041
]
122605362
Protein phosphatases and associated proteins [BR:
ecad01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
122605362
Messenger RNA biogenesis [BR:
ecad03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
122605362
Spliceosome [BR:
ecad03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
122605362
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
zf_CCCH_4
Nup35_RRM
ECM11
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
122605362
NCBI-ProteinID:
XP_043634223
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All DBs
Position
6:complement(33930116..33935597)
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AA seq
862 aa
AA seq
DB search
MDLKVSAEESGQSPSLSESNPDEKEISDDDDDDRNHKHRRRDDARSQSQERDAVEQVFTK
PFRRGNKPFVNGHNYREASSQSSETWKNQAFNSMGSKFDKKRTGFTQSSQGPLDLNQRFR
GDVGPVRGRGRDSGHWNQRDSRFNSADIASQIVQQGSVPPGLYSGRGLPTVSNAYGPSWG
TFGLVPGMPNGGLDTLHPLGLQGAYRSINPSMNMGMGLARQRCRDFEEQGFCLRGDMCPM
EHGVNRIVVEDVQSLSQFNLPVSLQNANMPGTSGGPGPLPASGISTNSMFSTKSSHGKTS
KRGVGGNGQGLNDVGADFYDPDQPLWGNDSQTSPALQSISHSNVKDNGPLLDLGPARDAS
DEQVVKSGGNAMARISSTKNRAEMRENIITKASSSNFLQNGTERQEPSNSSQVAPHHSKS
LLPKMQSGNGKGVRKPSQRAQCTLFVNGVPPQQNKRDSLIAHFHKFGKVIDIYIPSDTER
AFVQFSKREEAEAALMAPDAVMGNRFIKLWWANRDNVPVNGTVSSYNPQIPIPPRGMPVS
SASHNDTIAPPASSDQLKPVIVNMPKAPPPSQKKLEILEVLKKEIRQKQEMLDQKRNDFR
RKLEKLQKQATTMKGEIEPEQVAKRQKLVIVADSTKTATPSSGDPETISLSPGAEVVGNG
NKSLEAAVPKSSKSKAVTHQEPPVLKPSVRPLVPISPSAVTNRFKLDNRPTAFKIVSVLP
NDLSDVKVLKEHFSPFGDLSKVELDDVEPIDGDTDPGTAKYSARIYFNTRHSAEKAFVSG
KCWNGHNLQFTWLKSTSGSKDGESPSTSKGNSDSSVGPGVEIPKTDSPKPATSGEAATSG
DSESEKIKQTDIGKDHMEPDES
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggatcttaaagtttctgctgaggaatcaggtcagtcaccttccttatccgaaagcaat
cctgatgagaaagaaataagtgatgatgatgatgatgatcgcaaccataagcatcgtaga
agagatgatgcaaggtctcaatcacaggagcgagatgctgtggaacaagtatttactaaa
ccatttagaaggggaaataaaccatttgtaaatgggcataattacagggaagcaagttct
cagtctagtgaaacatggaaaaatcaggctttcaactccatgggttccaaatttgataaa
aaacgaactgggtttacacaatcttctcaaggacctttggatttaaaccagagattcagg
ggggatgttggtccagttaggggtagaggaagggactctggtcattggaaccaacgtgat
tctagatttaattctgccgatattgcttctcaaatagttcaacagggatctgtaccccct
ggtctgtattctgggcggggtttaccgactgtttcaaatgcatatgggccatcctggggt
acatttgggttggttccaggaatgccaaatggtggcctggatacactacatcccctaggg
ttacaaggagcatacagatctattaatccttctatgaacatgggaatgggacttgcccgt
caacggtgtagagactttgaggaacaaggtttttgcttaagaggtgacatgtgcccaatg
gagcatggggttaaccgtattgttgtggaagatgttcagagcctatcacagtttaatcta
cctgtatcgcttcaaaatgcaaatatgcctggaacgtcaggtgggccaggacctttacct
gcatctggtatctcaacaaattcaatgttcagcaccaagtcttcacatggcaaaactagc
aaacgtggagttggtggcaatgggcagggcttaaatgatgttggtgctgacttttatgat
cccgatcagcctctgtggggtaatgactctcaaacatcacctgcactgcaatcgatcagt
cactctaatgtgaaggataacgggcctttgttggatctgggcccagcacgtgatgcttca
gatgaacaggtggtcaagagtggtgggaatgctatggcaagaattagcagtacaaaaaac
agagcagaaatgagagagaatataattacaaaagcaagttcctcaaattttctccaaaat
ggaactgaaaggcaggaaccatccaatagctctcaagttgctccccatcatagtaaaagt
ttattacctaaaatgcaaagtggaaacggaaagggtgtccgtaagccttctcaaagggca
caatgtacattgtttgtgaacggtgttcctccccaacagaacaaaagggattccctgatt
gcgcattttcataaatttggtaaagtaattgatatttacattccgtcagatactgaacga
gcatttgttcaattttccaaaagagaagaagcagaagctgctctcatggcacctgatgct
gtgatgggtaatcgctttattaagttatggtgggctaatcgtgataatgttcctgttaat
ggaacagttagttcctataatccccaaataccaatacctcctcgtggcatgccagtttca
tcagcatcacataatgacacaattgccccacctgcatcatctgatcagttaaagcctgtg
atcgtaaacatgccaaaagcacctccgccttcacagaagaaactggagattttagaggtt
ttgaagaaggagattcgtcagaagcaagaaatgcttgatcagaagaggaatgactttcga
cgcaagttggaaaaacttcagaaacaagctacaactatgaaaggggagatagaaccggaa
caggtggctaaaagacagaagttagtaattgtagctgattctacaaaaactgcaactcca
agttctggtgatcctgaaacaatatcattgtcaccaggagctgaagtggtaggtaatggt
aacaagtctctggaggctgctgtgccaaaaagttccaaatcaaaagcagttacacatcaa
gaaccacctgtcttgaaaccatcagtacgcccattggtaccaattagcccatcggctgtc
accaatcggttcaaactggacaatcgacccactgcatttaagatcgtctcagtcctgcca
aatgatctttccgatgttaaagttttgaaggaacacttctcaccattcggggatctttct
aaggtggaacttgacgatgtagagcctattgatggcgatactgatcctggaacagctaaa
tattcagcccgcatttatttcaacacccgacattcagctgagaaggcatttgtaagtggt
aaatgttggaacggtcacaacttgcagtttacatggctaaaatctacgagcggcagcaaa
gatggcgaaagtccatccacttctaaaggaaattcagattcttctgttggtcctggggtt
gaaattccaaaaaccgattctccaaaacctgccacatctggagaagctgctacatctgga
gatagtgaatccgaaaagattaaacaaactgatatcggtaaagatcatatggaaccagat
gaaagttaa
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