KEGG   Erigeron canadensis (horseweed): 122611289
Entry
122611289         CDS       T07610                                 
Name
(RefSeq) lysine-specific demethylase 5A isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
ecad  Erigeron canadensis (horseweed)
Brite
KEGG Orthology (KO) [BR:ecad00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ecad01009]
    122611289
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ecad03036]
    122611289
Enzymes [BR:ecad01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     122611289
Protein phosphatases and associated proteins [BR:ecad01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     122611289
Chromosome and associated proteins [BR:ecad03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    122611289
SSDB
Motif
Pfam: JmjC PLU-1 PHD JmjN zf-C5HC2 ARID KDM5_C-hel PHD_5
Other DBs
NCBI-GeneID: 122611289
NCBI-ProteinID: XP_043640225
LinkDB
Position
8:49186061..49201317
AA seq 1836 aa
MGKSRPRAAEKRVLGQGSIALASSSVSTIPSAPVYYPTEDEFKDPLAYIYKIRPEAEQFG
ICKIVPPGNWKPPFALDLDKFTFPTKTQAIHQLQARPPACNSKTFELEYNRFLEEHCGKK
AVKKKVVFEGKELDLCRLFNGVKRYGGYDNVEKEKKWEEVFRFVRSGGKVTKCSKYVLSQ
LYKEHLYDYEVYYSKLDRIKEKSCKRGMDVEKKGGQKSCKRSRVSEAGQKVETSKVLEEQ
VYDQICEQCRSGLHAEVMLLCDRCNKGWHIYCLSPPLKRVPPGNWYCSECFNSEKDSFGF
VPGKQLSLEAFRRVADRAKKKWLGSTSVSRAQLEKKFWEIVEGSVGEVEVIYGSDLDTSV
YGSGFPRVGDQRPSSIEIDGWDEYCASPWNLNNLPKLQGSMLRAVHHNIAGVMVPWLYIG
MLFSSFCWHFEDHCFYSMNYHHWGEPKCWYSVPGNEASAFEKVMRSSLPDLFDAQPDLLF
QLVTMLNPSVLQENNVPVYSVLQEPGNFVITFPRSYHGGFNFGLNCAEAVNFAPADWLPY
GGFGAELYQHYRKPAVLSHEELLCVVAKNDFDGNALPYLKNELLRVYNKEKSWRERLWKN
GIIRSSPMAPRKQPNYVGVEEDAACIICQQFLYLSAVGCSCRPSAFVCLEHWENLCECKF
RKRHFLYRHTLAELNDLVIMKEDPDSEEMTQRNKRTHLTCPNESSPLSKKVKDGHVTITQ
LAEEWTLRSCKILQMPYSNVAYATALKEAEQFLWAGSEMDPVRELAKNLVKAQKWAEGVR
DCLSKVELWSSQQNCKMKRVNMEDLATLLNVSPVPCNEPGHLKLKSHEEEARVLIQEICL
ALTTSSNIADLETLYSKACKFAIYVKESDELSTKLSAVKLWLHTVRKCISEKAPGLIEVD
VVNDLKSKIAELQLQVSEIPTFLDLVSQVELCQSRCTEMLKGPIALKNLELLVQEYDGFT
VNVLELKLLRQYQSDAFDWISRFHNVVKNINEREDQENVVNELKCLQKDGSLLKVQVDEI
PLVDVELKKAFCRVEAWKILRSKMPFESIQKVVAVANELHIENEMVFKKISDVLAQAVCL
EEKAKHILATEVQLSDFEDVVRMSEDLCALLPSFDGVKTALSMAKSWLTKCKPYLESDFS
MSVANPLLNVDMLKELVSESKLLKVYLDERSLLEDVLQNYMQWEANACTALHDAESLLNI
LNVGDESSYFIPKISVQAAKMESIMKNELSHRFDSLVIAKLQETCAIFHWCFKALAFRAV
APSLKEIEMLLEDAERHNVKYASRSFWKSLVDGLTWLKRAVEILGPCKVQRFNLNDVEEA
LRQSKILEVSFPLIVGQLHDAINRHNVWVDVVKEFFSRSPRNRSWFSLMQLEGLGSTDAL
NCMEMDLVTSEMQKVKEWKQRCGDIVGVKVPDDDLLLNALSKILDSLDRSLYVYKNVGGC
TQRSVCIICSNDYQDQELSTCSVCMDCYHTQCIKPIFGGTSYAATHICPYCHIVESGKVS
RLKFDTKRTELSMLVELLSDAKNLCVEIKEKAIIHRILEKFLAYKDCLVKTSEFSLGSLG
KDPSVVFCKLSTALKAIEVAGVYERETNCKFELALARNSWRVRAYKLLDGSQKPSMQQIQ
RLLKEGLAINVPLEDYFCNRLETVRHFGLQWAAKAKKVSGDSGALELYKVFELIAEGENF
PVHFDKELKLLRERSMLYCICRKPYDQRAMIACDKCDEWYHFDCINLASAPKNYICPACK
VDVADEAKCTSSSVWQERSYGECEEPQTPSPRPVELRRELEKFNSNATRKVADSDDISTR
RRSGIERLLWRNRKPFRRTSKRRVELEVFSPFFHVQ
NT seq 5511 nt   +upstreamnt  +downstreamnt
atggggaaaagtagacctagggctgccgaaaagagagtgttagggcaaggatcaatagca
ttagcatcctcttccgtgtccactataccgtctgcacccgtttattaccctaccgaagac
gaattcaaggatcccttagcctacatttataagatccgtcccgaggctgaacagtttggc
atttgtaaaatcgtaccgccggggaattggaagcccccctttgccctagatttggacaag
ttcacgtttcccactaaaacgcaggcgatacaccagttgcaggcccggccgcctgcgtgt
aactcgaaaacgtttgagttggagtataataggtttctggaggaacattgtgggaaaaaa
gctgtcaagaagaaggtggtttttgaagggaaggagttggatttgtgtcggttgtttaat
ggggtgaaacggtatggagggtatgataatgtcgagaaggagaagaagtgggaagaggtt
tttcggtttgtgaggtcgggtgggaaggttactaagtgttctaagtatgtgttgagtcag
ctgtataaagagcatttgtatgattacgaagtttactatagtaagttggataggattaag
gagaagagttgcaagagaggtatggatgttgagaagaaaggtgggcagaaaagctgtaag
agaagtcgggttagtgaagcgggtcagaaagttgaaacaagtaaagtgctagaggaacaa
gtgtatgatcagatatgcgaacaatgtagaagtgggttgcatgccgaagtaatgctgttg
tgtgataggtgtaataagggatggcatatatattgtttgtcgccaccgttgaaacgggtt
ccacctggtaattggtattgttcggagtgctttaactccgagaaggatagctttggtttc
gtgcctggtaaacagttgtcgttagaagcttttaggcgtgtggctgatcgggctaagaag
aaatggttgggttcaacatctgtctcaagggcacaattggagaagaagttttgggaaata
gttgaaggatcggttggtgaagttgaagttatttatggcagtgatctggatacgtctgtc
tatggtagtggcttcccccgtgtaggtgatcaaagaccatcgtctatagagatcgatgga
tgggatgaatactgtgctagcccatggaatcttaacaatttgcccaagttacaagggtcg
atgcttcgtgctgttcatcataatattgctggtgttatggttccttggctttacattggg
atgctattttcatctttttgctggcactttgaagaccattgtttctactccatgaattat
caccactggggagagcctaaatgttggtacagcgtccctggcaacgaagctagtgctttt
gagaaggtcatgcggagcagccttcctgatttgtttgacgcacaacctgacctgcttttt
cagctggtcactatgctgaatccatcagtcctgcaagaaaataatgttccagtttacagt
gtgttacaggaacctggaaattttgtcattaccttccctagatcttatcatggaggtttc
aactttggcttaaattgtgctgaagccgtgaattttgcaccagctgattggctaccttat
ggtggttttggagcagagctttatcagcattatcgtaaacctgctgtcttgtctcatgaa
gaactgctttgtgtagtagccaagaatgattttgatggcaatgcgttaccttacctgaag
aacgagttgcttcgggtatataataaagaaaagagttggagagaacgactttggaaaaat
ggcattattagatcttcacccatggcacctcggaagcagccaaattatgttggtgttgaa
gaggatgcagcatgcatcatatgtcagcagttcttgtatctttcagctgttggttgcagc
tgcaggccttctgcgtttgtttgtctggagcactgggaaaatctgtgtgaatgcaagttt
cgcaaacgccattttctttaccgccacacacttgcagaattgaatgatttggtcattatg
aaggaggatcccgactctgaggaaatgacccaaagaaacaagcgaacccatttgacttgt
cctaatgagtcatcccctctatcaaaaaaggttaaagatggccatgtaacaattacgcaa
cttgctgaagagtggaccctgaggtcttgtaaaattcttcagatgccatattcaaatgtt
gcttatgccactgccttgaaggaagctgaacagtttctttgggctggttctgaaatggat
ccagtccgagaactggcaaaaaacttggttaaagctcagaaatgggcagaaggtgtaaga
gactgtctttcaaaagtcgagttgtggtcatctcaacaaaattgtaagatgaagagagtt
aatatggaagatctggccactttgcttaatgtcagtcctgtgccatgtaatgaacctgga
catctgaagttaaagagtcatgaagaagaagcgagagtgctgattcaagaaatttgttta
gccctaacaacatcctccaatattgctgatctggaaaccttgtactccaaagcttgcaag
ttcgctatctatgtaaaagaaagcgatgaattatcgactaaactgtcagctgtgaagctc
tggctacacacggtaagaaaatgcatctcagagaaagctcctggtttgatcgaggttgat
gttgtcaatgacttgaaatcaaagatagcagaacttcaactccaagtttccgaaatacct
acgtttttggatcttgtatctcaagttgaattatgtcaatctcgatgtactgagatgttg
aaaggtccaatagcactaaagaaccttgaactgctagtccaagagtatgatggttttact
gtcaatgttctggagttaaaacttttaaggcaatatcagagtgatgcctttgattggata
tctcgttttcataatgttgtgaagaacattaatgagagggaggatcaagaaaatgttgtt
aatgagttgaaatgccttcaaaaagatggatcattgttgaaagttcaagttgacgagata
cctcttgttgatgtggagttgaagaaggctttctgcagggtcgaagcgtggaagatcctt
cgtagtaaaatgcctttcgaatctattcagaaagtagttgctgtggccaacgaactacat
attgagaatgagatggttttcaagaaaatttctgatgtacttgctcaagctgtgtgcttg
gaagaaaaagcaaaacatattcttgccaccgaggttcagctgtctgattttgaggatgtc
gtaaggatgtcggaggatctttgtgcacttctaccttcatttgatggtgttaaaacagct
ttatcaatggcaaagtcgtggttaactaagtgtaaaccctatttggaatctgatttttcg
atgtcggttgcaaatccgttgctcaatgttgacatgctgaaggagctggtttcagaatca
aagctactgaaggtatatttggacgagcggtctctgctcgaagatgttttacaaaattat
atgcagtgggaggctaatgcctgtactgcattgcatgatgctgagtcactgttgaacatt
cttaatgttggggatgagagttcttatttcatccccaaaatttcggttcaggctgctaaa
atggagtccataatgaagaatgagttatcacatcgttttgactcccttgtgattgcaaaa
ctacaagaaacttgtgcgatttttcattggtgcttcaaggcgcttgctttccgtgctgtt
gctccctcactcaaagaaattgaaatgttgttggaggatgctgaacgtcataatgttaaa
tatgcatcgcgttctttctggaagtcattggttgatgggcttacttggcttaagcgagct
gttgagattcttggtccatgcaaagttcaaagatttaatttgaatgatgttgaagaagct
cttagacaatcgaagatattagaagtatccttcccattgatcgttggccaattacatgat
gctatcaacagacacaatgtatgggtcgatgtagtgaaagaatttttcagccgcagccct
agaaatcgatcatggttttcgttaatgcagctcgaggggcttggcagcactgatgctttg
aattgcatggaaatggatttggtcacatctgaaatgcaaaaagtcaaagagtggaagcag
agatgcggagacattgttggggttaaggttcctgatgatgacctgctgctgaatgctcta
tctaagattttagatagtctagacagatctttgtatgtgtataagaatgttggtggttgc
acccaaagaagtgtttgcataatctgctcaaacgactatcaagatcaggagctctcaact
tgttctgtgtgcatggattgctaccatacgcagtgtataaaaccaatttttggcggtaca
agttatgcagcaactcatatatgtccttattgccatatcgttgagagtggcaaagtctct
cgattgaaatttgacacaaaacgtactgagttgagtatgcttgtagagcttctatctgat
gctaaaaacttatgtgtagagatcaaggaaaaagctataatacatcgaatacttgagaaa
tttttggcatacaaagattgcttggtcaaaacttcagaattttctttgggttctctaggc
aaagacccgagcgtggtattttgtaaactatccactgctttaaaggcaatagaggtggct
ggagtttatgagcgggaaactaattgcaagtttgagcttgcattggcaagaaattcttgg
agagtccgggcatataagttattagacggttcacaaaagccttcaatgcaacagatccaa
cgccttttaaaagagggtcttgctataaatgttcccttggaagattatttctgcaataga
ctcgagacagtacggcactttggtttgcaatgggcagcgaaggccaaaaaggtttcgggg
gattctggtgcacttgaattgtataaagtatttgaacttatagcagaaggggaaaatttt
ccggtgcactttgacaaggaactcaagttattaagagagcgcagtatgctttactgcatt
tgtaggaagccctacgatcagagagcaatgattgcttgtgataaatgtgacgaatggtat
cactttgattgtattaacttagcttcagcgccaaagaattacatttgccctgcatgcaag
gttgatgtagccgatgaagctaaatgcacgtcgtcatcagtgtggcaagaaaggtcttat
ggtgaatgcgaagagcctcaaacaccatctccgagaccagtggagttgaggagggaattg
gagaaattcaattcaaatgcaactagaaaggtagctgatagtgatgacattagtacccgg
agacgtagtggcattgaacgccttttatggagaaaccggaagccttttagaagaacatct
aaaaggcgtgtagagcttgaagttttttctccattttttcatgtacagtaa

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