Equus caballus (horse): 100051633
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Entry
100051633 CDS
T01058
Symbol
COL27A1
Name
(RefSeq) collagen alpha-1(XXVII) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
ecb
Equus caballus (horse)
Pathway
ecb04820
Cytoskeleton in muscle cells
ecb04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100051633 (COL27A1)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100051633 (COL27A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ecb00536
]
100051633 (COL27A1)
Glycosaminoglycan binding proteins [BR:
ecb00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100051633 (COL27A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
100051633
NCBI-ProteinID:
XP_023484489
LinkDB
All DBs
Position
25:19367106..19511767
Genome browser
AA seq
1840 aa
AA seq
DB search
MGAGSARGARGTAAAAAARGGGFLFTWILVSFACRLASTQGPPEDVDVLQRLGLSWTKAA
GGRSPPPPGVIPFQSGFIFTQRARLQAPTATVIPATLGAELALVLSLCSHRVNHAFLFAV
RSRKHKLQLGLQFVPGKTVVHLGPRRSVAFDLDMHDGRWHHLALELRGRTVTLVTACGQR
RVPVPLPFHRDPALDPEGSFLFGKMNPHAVQFEGALCQFSIHPVARVAHNYCAHLRKQCG
QADMYRPRLGPLLPQDAGSPFAFQTDLALLGLENLTTAAPALGSRPAGSGPWVTVVPPTP
SKPQRTSTIDPQQRVTVGSPAWTPLPPAKLSASELLPLTSPASPASSSRSVQTLRKSTAT
KMPKSPPTEPTAPSSVAPVQSPGSPQKAAPPSFTKSARPTKKPALPTPHPAPARVSRPTV
KPIQRNPGTPRPPPPSGRPPPPATGSSKKLVPSVVQTETKKSSRASEPGPAHTGTRRPPQ
PTVLHPSPAPSPGSIRTTRPPATLALGSAPTGSKKSTGSEATRKARPKSGPRKPVPLRPG
KAARDVPSNPPTAGPSPRPPQPSPQTTPAPALAPVRFPSSSPRPMSSGYSFFHLAGPTPF
PLLVGPPGPKGDCGLPGPPGLPGLPGPPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGL
SPGKAHDGAKGDMGLPGLSGNPGPLGRKGHKGYPGPAGHPGEQGQPGPEGSPGAKGYPGR
QGLPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGRPGFPGDFGERGP
PGLDGNPGELGLPGPPGVPGLMGDMGVLGPIGYPGPKGMKGLMGSMGEPGLKGDKGEQGV
PGVSGDTGFQGDKGSQGLPGFPGARGKPGPLGRVGDKGSLGFPGPPGPEGFPGDIGPPGD
NGPEGMKGKPGARGLPGPRGHLGPEGDEGPMGPPGAPGLEGQPGRKGFPGRPGPDGLKGE
PGSPGRPGPVGEQGLLGFIGLVGEPGIMGEKGDRGMVGPPGVPGPKGSMGHPGMPGGVGT
PGEPGPPGPPGSRGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGQPGQQGT
AGERGHSGPRGFPGIPGPSGPPGTKGLPGEPGPQGPQGLIGPPGEMGPKGPPGAVGEPGL
PGEAGMKGDLGPLGTPGEQGLIGQRGEPGLEGDSGSAGPDGLKGDRGDPGPDGERGEKGQ
EGLKGEDGPPGPPGITGIRGPEGKPGKQGEKGRTGAKGAKGYQGQLGEMGVPGDPGPPGT
PGPKGSRGSLGPTGAPGRMGAQGEPGLAGYEGHKGVIGPLGPPGPKGEKGEQGEDGKAEG
PPGPPGDRGPVGDQGDRGEPGDPGYPGQEGVQGLRGNPGQQGLPGHPGPRGRPGPKGSKG
EEGPKGKQGKAGAPGRRGIQGLQGLPGPRGVVGRQGPEGVAGPDGLPGRDGPVGQQGEQG
DDGDPGPMGPAGKRGNPGVAGLPGAQGPPGFKGESGLPGQLGPPGKRGTEGGTGLPGTQG
EPGSKGQPGDSGEMGFPGMAGLFGPKGPPGDIGFKGIQGPRGPPGLMGKEGIIGPLGILG
PSGRPGPKGDKGSQGDLGLQGPRGPPGPRGRPGPPGPPGSPLHFQQDDLGAAFQTWMDTN
GALRAEGYSHPDRLVLDQGGEIFKTLHYLSNLIQSIKTPLGTKENPARVCRDLMDCEQKM
VDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFAVSRVQMNFLHLLSSEVT
QHITIHCLNMTVWQESTGQTPAKQAVRFRAWNGQIFEAGGQFRPEVSVDGCKVQDGRWHQ
TLFTFRTQDPQQLPIVGVDNLPPASSGKQYRLEVGPACFL
NT seq
5523 nt
NT seq
+upstream
nt +downstream
nt
atgggagcgggatcggcgcggggggcccgaggcacagcggcggcagcggcggcgcgcggg
ggggggtttctcttcacttggatcttagtctcgtttgcctgtcgcctggcctccacccaa
ggacctcctgaagatgtggatgtccttcagcgcctgggcctcagctggacgaaggcagca
ggcggccggagccccccgcccccgggggtcattccgttccagtccggcttcatcttcacg
cagcgggcccggctgcaggcccccacggccaccgtcattcctgccaccctgggcgcggag
ctggcgctggtgctgagtctctgctcccaccgggtgaaccatgccttcctcttcgccgtc
cgcagccgcaagcacaagctgcagctgggcctacagttcgtccccggcaagacggtggtc
cacctgggaccccggcgctccgtggcctttgacctcgacatgcacgatgggcgctggcac
cacctggccctcgagctccgtggccgcacggtcaccctggtgacggcctgcgggcagcgc
cgggtgcctgtcccactgcctttccacagggacccggcgctcgaccccgagggctcgttc
ctcttcgggaagatgaacccccacgcggtccagtttgaaggcgccctgtgccagttcagc
atccaccctgtggcgcgggtcgctcacaattactgtgcccacttgagaaagcagtgtgga
caggctgacatgtaccggccccggctgggacccctcctcccccaagacgctggctcacct
ttcgccttccagaccgaccttgctctgctgggcctcgagaacctgaccactgccgctcca
gccctggggtcgcggcctgcaggcagcgggccctgggtgactgtggtgcctcccacgccc
tccaagccccaaaggactagcaccatagacccccagcagcgtgtcacagtgggaagccca
gcctggaccccactaccacctgccaagctgtcagccagtgaattgcttcctctcacatcc
ccagcctcgcctgccagcagctccagatctgtccagacattgcggaagagcacagccacc
aaaatgcccaaaagtcccccgaccgagcctacagccccttcttcagttgcccccgtccaa
agcccgggatccccccagaaggcagctccgccttcctttacaaagtcagcccgtcccacg
aagaagccagcgctgcccactccccacccagctcctgccagggtctcccgtcccaccgtg
aagcccatccagaggaaccccggcacgcccagacctccgccacccagcggccggccccca
cctcccgccactggctcctccaaaaagctcgtcccctccgtggtccagactgagaccaag
aagagcagtagggccagtgagccgggccctgcccacaccggcacacgcagacctccccaa
cccactgttttgcacccatcacctgcccccagtcctggctccatcaggaccactcggcca
ccagccaccctggctcttggttcagcccccactggaagcaagaaatccactggatcagaa
gccacgaggaaagccagacccaagagcggcccccggaagcccgtccccctcagacctggg
aaggcagccagggacgtcccgtcgaaccctccgacagccgggccgagccccagaccgccc
cagcccagcccgcagaccaccccagctccggcgttggcccccgtgcgattcccgtcctcc
agcccccggcccatgagcagtggctattccttcttccacctggcgggacccacgcctttc
cctctgctggtgggacctccggggcccaagggagactgcggtttgccgggtccccctggg
ctgcctgggctccctggaccccctggggcacgggggccacggggtcctcctgggccttat
ggaaacccaggcctccctgggcccccgggagccaaaggacagaaaggggaccccgggctc
tcaccaggaaaggcccacgatggggcgaagggcgacatgggcttacctgggctctcgggg
aatccaggacctcttggacgaaagggacacaagggctatcctggaccggcggggcacccc
ggagaacaggggcagccgggacctgagggcagcccaggggccaaaggttaccctggcagg
caggggttacctggacctgtaggagaccccggccccaaaggcagccggggttacattgga
ctcccagggctcttcggcctgccagggtccgacggagagcgaggtctgcctggcgttcct
ggcaagaggggcaagatgggtaggccggggtttcctggagattttggggagagaggccct
cctggactggacggaaaccctggagagctgggcctgccaggacccccgggagtccccggc
ctcatgggcgacatgggagttttgggcccgattggctacccaggacccaagggcatgaag
gggctgatgggcagcatgggagaacccggactgaaaggtgataagggtgaacaaggggtt
ccaggtgtgtcaggagataccggattccaaggagacaagggaagccagggactgccaggg
ttcccgggcgcacgggggaaaccagggcctctgggcagagttggagacaaaggatccctc
gggtttcctgggccccctggccccgagggattccccggagacattggcccccctggggac
aatggcccagaaggcatgaagggtaagcctggagctcgaggcctgccgggaccccgtggg
catctggggcccgagggagatgagggacccatggggccaccaggggcccctggcttggag
ggtcaacccggcaggaaggggtttcctgggaggcccggcccggatggcttgaagggggag
ccaggcagtcctggacggccggggcccgtgggcgagcagggacttctgggattcatcggt
ctggtcggggagccgggaatcatgggagaaaagggtgaccggggcatggtgggaccccca
ggcgtgcccggacccaaggggtcgatgggtcatcccggaatgccaggtggtgttgggacc
cccggagagcctggacccccgggtcctccaggatctcgaggccctccgggaatgagggga
gccaagggacgccggggcccccgaggaccagacggaccagctggggagcaggggtccagg
ggcctgaagggccctccaggaccgcagggcagaccgggccagcccgggcagcagggaacg
gctggcgagcgagggcactcaggcccgcgaggctttcccggcatccctggtccctcgggc
cccccaggcaccaagggcctcccaggagaaccgggccctcagggaccccaggggctaatt
ggccctccaggagagatgggacccaaggggcctccaggtgcagtgggagaaccgggcctt
cctggggaagccgggatgaagggggaccttgggcctctgggcacccctggggagcagggc
ctcattgggcagcggggagagccaggcctcgagggtgacagtggctctgcggggcccgac
gggctgaagggcgacaggggtgaccccgggcctgatggtgaacgtggcgagaagggccag
gaggggctgaagggtgaggatgggccccccgggccccctggcatcactggtatccggggt
cctgaaggaaaaccagggaaacaaggcgagaagggcaggaccggagccaagggtgccaag
ggctaccaaggacagctgggtgagatgggcgtccctggagaccccggaccccctggcacc
ccaggccctaaagggtcccggggcagtctgggaccaacgggtgctccgggacggatgggg
gcccaaggagaaccgggactggctggttacgaaggacacaaaggtgtcataggacccctc
ggacctcctggaccaaagggcgagaagggggagcagggcgaggacggcaaggccgagggg
ccccccgggccacctggagatcggggccccgtgggtgatcaaggagaccgcggggagcca
ggggaccccggataccctggacaggagggtgtccaaggcctccgtggaaatccgggccag
cagggcctacccgggcatccaggaccccggggtcgaccgggacctaaaggatcgaaaggg
gaagagggaccaaagggaaaacaaggcaaggccggggcaccaggacggagggggatccag
ggcctgcaggggctgccggggcctcggggcgtggtggggagacagggccccgagggcgtc
gctggaccagatgggcttcctggcagggacggtccagtgggacagcagggggagcaggga
gacgatggggaccctggccccatgggccctgctgggaagagaggaaatccaggggtggcc
ggcttgcctggagcccaggggcccccaggattcaagggtgaaagtgggttacctgggcag
ctgggtcctcctggcaagcgggggacagagggcggaacagggcttcccgggacccagggg
gagcccggatccaaaggccagccgggtgactccggcgagatgggcttcccaggaatggcc
ggcctcttcggacccaagggcccccctggagacatcggcttcaaaggcatccagggccct
cgggggccccctggcctgatgggaaaggagggcatcatcgggccccttggaatcctggga
ccttcaggacgcccgggtccgaagggcgacaaaggcagccaaggggacttgggattgcaa
ggtccgaggggtcctcccggcccccgagggcggcccggcccaccgggtcctccaggaagc
cccctccactttcaacaagatgaccttggggcagctttccagacgtggatggacacgaat
ggagcactgagagcagagggttacagccatccggaccggctggtgctggaccagggcggg
gagatctttaaaaccttacactacctcagcaacctcatccagagcattaagacgcccctg
ggcaccaaagagaaccccgcccgggtctgccgggacctcatggactgcgagcagaagatg
gtggatggtacctactgggtggatccaaaccttggctgctcatccgacaccattgaagtc
tcctgcaacttcacacatggtggacagacgtgtctcaaacccatcacggcctccaaggtc
gagtttgccgtcagccgggtccagatgaattttctgcacctccttagctctgaggtgacg
cagcatatcaccatccactgccttaacatgaccgtgtggcaggagagcaccggacagacc
ccagccaagcaggccgtgcgcttccgggcctggaacgggcaaatctttgaagccgggggt
cagttcaggccggaggtgtccgtggatggctgcaaggtccaggatggccgctggcatcag
acgctcttcaccttccggacccaggacccccagcagctgcccattgtcggcgtggacaac
ctccctcctgcctcatctgggaagcagtaccgcctcgaagttggacctgcctgcttcctc
tga
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