Equus caballus (horse): 100062843
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Entry
100062843 CDS
T01058
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
ecb
Equus caballus (horse)
Pathway
ecb04140
Autophagy - animal
ecb04148
Efferocytosis
ecb05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ecb00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
100062843 (VPS41)
04148 Efferocytosis
100062843 (VPS41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
100062843 (VPS41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ecb04131
]
100062843 (VPS41)
Membrane trafficking [BR:
ecb04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
100062843 (VPS41)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
ANAPC4_WD40
Vps39_2
Vps39_1
zf-RING_5
Frtz
RIG-I_C
zf-RING_11
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
100062843
NCBI-ProteinID:
XP_005609146
Ensembl:
ENSECAG00000006943
VGNC:
24930
LinkDB
All DBs
Position
4:complement(10171507..10350180)
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AA seq
854 aa
AA seq
DB search
MAEAEEQETESLEESTDESEEEESEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLAL
GTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFH
ETFDCPIKIIAVHPQYVRSSCKQFVTGGKKLLLFERSWMSRWKSSVLHEGEGNIRSVKWR
GHLIAWANNMGVKIFDITSKQRITNVPRDDISLRPDMYPCSLCWKDNVTLIIGWGTSVKI
CSVKERHASEMRDLPSRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEVSEKTEREYCA
RPRLDIIQPLAETCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIVSPRDVVVAKER
DQDDHIDWLLEKKKYEEALMAAEISQRNIKRHKILDIGLAYINHLVEKGDYDIAARKCQK
ILGKNAALWEYEVYKFKEIGQLKAISPYLPRGDPVLKPLIYEMILHEFLESDYEGFATLI
REWPGDLYNNSVIVQAVRDHLKKDSQNRTLLKTLAELYTYDKNYGNALEIYLTLRHKDVF
QLIHKHNLFSSIKDKIVLLMDFDSEKAVDMLLDNEDKISIKKVVEELEDRPELQHVYLHK
LFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVYLL
SRMGNSRSALKMIMEELHDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMHRTQM
KGVLVDEENICESCLSPILPSDAAKPFSVVIFHCRHMFHKECLPVPSMASPAQFCNICSA
KHRGPGSAILEMKK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcagaggagcaggaaactgagtctcttgaagaatctacagatgagtctgag
gaagaagagagtgaagaggaacccaaactgaagtatgaaaggctttccaacggggtgaca
gaaatccttcagaaggatgcagctagctgcatgacagtccatgacaagtttttggcactt
ggcacacattatggcaaggtttatttacttgatgtccaggggaacatcactcagaagttt
gatgtaagtcctgtgaagataaatcagattagcctggatgaaagtggagaacacatgggc
gtctgttcagaggatggcaaggtgcaggtgtttggactgtattctggagaagaatttcat
gagacttttgactgtcctattaaaatcattgctgtgcacccgcagtacgtgaggtccagc
tgcaagcagtttgtgaccggagggaagaagttgctgctgtttgaacgatcttggatgagc
aggtggaagtcttcagttctgcacgaaggggaaggaaacataaggagtgtgaagtggaga
ggccacctgattgcttgggccaataacatgggtgtgaagatttttgacatcacctcaaag
cagagaatcaccaatgtgccccgggacgatatcagtcttcggccagatatgtacccctgc
agcctgtgttggaaggacaacgtgacactgattattggctgggggacatctgtcaagata
tgctcagtgaaggaacggcatgccagtgaaatgagggacttgccgagtcgatatgttgaa
atagtgtctcagtttgaaaccgaattctacatcagtggacttgcgccgctctgtgatcag
cttgttgtactgtcctacgtcaaggaggtttctgaaaaaacggaaagagaatactgtgcc
aggcccagattggatattatccagccacttgccgagacttgcgaagagatctcttccgat
gctctgacagtgaggggctttcaggagaatgaatgtagagattatcatctagaatactcc
gaaggggaatcactcttttacattgtgagtccaagagacgttgtagtagccaaggaacga
gaccaagacgaccacatcgactggctccttgaaaagaagaaatatgaagaagctttgatg
gcagctgaaattagccaaaggaacattaaaagacataagattctggatattggcttggca
tatataaaccacctggtggagaaaggagactatgacatcgcagcacggaaatgccagaaa
attcttgggaaaaatgcagcactctgggaatatgaagtttataaatttaaagaaattgga
cagcttaaggctattagtccttatttgccaagaggggatccagttctgaaaccactcatc
tatgaaatgatcttacatgaatttttggaaagtgattatgagggttttgccacactgatc
cgagaatggcccggagatctgtacaacaattcagtaatagttcaagcagttcgggaccac
ctgaagaaagacagtcagaacaggaccttacttaaaaccctggcagaattgtacacctat
gacaaaaactatggcaatgccctggaaatatacttaacattaaggcataaggatgttttc
cagttgatccacaagcacaatcttttcagttctatcaaggataaaattgttttattaatg
gattttgattctgagaaagctgttgacatgcttttggacaatgaagataaaatttcaatt
aaaaaagtagtggaagaattagaagacagaccagagttgcagcacgtgtatctgcataag
cttttcaagagagaccatcataaggggcagcgctaccatgaaaaacagatcagcctttat
gctgaatatgatcgaccaaacttgcttccatttctccgagatagtacccattgcccgctt
gaaaaggctcttgagatctgtcaacagagaaactttgtagaagagaccgtgtatcttctg
agccgaatgggcaatagccgaagtgccctgaagatgatcatggaggaattacatgatgtt
gataaagcaattgaatttgccaaggagcaagacgatggagaactctgggaagacctgatt
ttatattccatcgacaaaccaccatttattactggcttgttaaataacattggcacgcac
gttgacccaattctgctgattcaccgcattaaggaaggaatggagattcccaatttgaga
gattccttggttaaaattctgcaagattacaatttgcaaattctgcttcgtgaaggctgc
aagaagattctcgtagcagactctttgtccttactgaagaagatgcaccgaactcagatg
aaaggtgttctggtcgatgaggaaaacatctgtgaatcgtgtctttccccgattcttcca
tcagatgcagccaagcccttcagcgtggtgatcttccactgccggcatatgtttcacaag
gagtgcctgcccgtgcccagcatggcctcccccgcgcagttctgcaacatttgcagcgcg
aagcaccgcggaccgggaagtgccatcctggagatgaaaaagtag
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