Echinicola soli: FKX85_03655
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Entry
FKX85_03655 CDS
T06084
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
echi
Echinicola soli
Pathway
echi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
echi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FKX85_03655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
echi03021
]
FKX85_03655
03019 Messenger RNA biogenesis [BR:
echi03019
]
FKX85_03655
Transcription machinery [BR:
echi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FKX85_03655
Messenger RNA biogenesis [BR:
echi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FKX85_03655
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
AAA_25
AAA_22
OB_RNB
Mor
Motif
Other DBs
NCBI-ProteinID:
QDH78182
UniProt:
A0A514CED1
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All DBs
Position
874699..876504
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AA seq
601 aa
AA seq
DB search
MYNIEELKIRLLSELKEIAEELGVKNFKSLKKDDLIYAILDQQAITPEKALPKKKPAKAE
VEKPVPDTPEKKPEHKPSAEDNKETKPKFKRENVTESKKEDSPKAEDKPAKKPKDSAKDT
PKERKPKRSEAPKSENKPESKPESKPVGKSDSKAETKQDKPSSDENRPRSFRPRRKAVID
EEAQRVATERPQEPEVDLPKRKNFKEVSDEQPSQPSIGSSRKKYASLVKEFDGIIENEGV
LEIMSDGYGFLRSLDYNYLASPDDIYVSPSQIKLFGLKTGDNIKGQIRPPKEGEKYFALL
KVSSVNGKTTEEIRDRIPFEYLTPLFPEERLNLTTRADNFSTRIVDLFAPIGKGQRGMIV
AQPKTGKTVLLQKIANAIAENHPECHLMILLIDERPEEVTDMARSVKAEVISSTFDEQAE
RHVKVSSMVLEKAKRMVECGHDVVILLDSITRLARAYNTVVPSSGKILSGGVDANALHKP
KRFFGAARNVENGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELSLDRKLSNRRIYPA
IDVPGSGTRREDLLMEKEEMQRVWILRKLMSDMTSQEAMEFLLQRMRGTRDNAEFLISMN
G
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgtataatattgaagaactaaaaattagattgctatccgaattgaaggagatagcagaa
gaactgggggtgaaaaattttaaatccctaaagaaggacgatctcatctatgcgatctta
gatcagcaagcaatcacccccgagaaagcccttcccaagaaaaagccggccaaagcagaa
gtggagaaaccggtaccggatactcctgaaaagaaacctgagcataaaccatccgccgaa
gacaataaggaaaccaagcctaagtttaagcgggagaatgtaacggaatccaaaaaagaa
gattcgccaaaagcggaagacaagccggccaaaaaaccaaaggatagtgccaaggacact
cctaaagaaagaaagcctaagcggagtgaagcgcctaaatctgaaaacaagccggaaagc
aaacctgaaagcaagcccgtaggaaagtctgacagcaaagcagaaacaaaacaggacaaa
ccttcttctgatgaaaatcgaccaagaagcttcagacccagaaggaaagcagtgatagat
gaagaagcccagcgtgtggcaacagaaaggccacaggaaccagaggtcgatcttccaaaa
agaaaaaatttcaaagaggtatctgatgagcagcccagccaaccttccattggcagcagc
agaaagaaatatgcttctttggtaaaggaatttgatggaataatagaaaacgaaggggtc
ttggaaatcatgtccgacggatatggcttcttgcgctctctcgattataactacctggct
tcaccggatgacatttatgtgtcgccgtcccagatcaagctttttggactgaagaccggt
gataatatcaaaggacaaatcaggcctcctaaagaaggcgaaaagtatttcgctctgctg
aaagtgtcttctgtaaacggtaagaccaccgaggaaatccgtgacaggataccatttgaa
taccttaccccattattccccgaagaaaggctaaacctgaccacgcgagcggacaatttc
tctacccgaattgtagacttgtttgctcctatcggaaaaggacagcggggcatgatcgta
gcgcagccaaaaacaggcaagaccgtcctactgcaaaagattgccaatgcgattgcagaa
aaccatccagagtgccacctgatgatccttctgatcgacgagcgtccagaagaagtcacg
gacatggcaaggtcagtaaaagcagaagtgatttcttccacctttgacgagcaagctgag
cgtcacgtgaaagtatcttccatggtactggaaaaagccaaaagaatggtggaatgcggt
catgatgtggtaatcctattggattccattaccaggctggccagggcctacaataccgtg
gtaccatcttcaggaaagatcctatccggtggtgtggacgccaatgcacttcacaagcct
aagagattttttggtgcggccagaaacgtggaaaacggtggctcactgaccatcattgcc
actgcactggtagaaaccggctctaaaatggacgaggtgatctttgaagaatttaaaggt
acgggcaatatggaactgagcctggacagaaaactctccaacaggagaatttaccctgcg
atcgatgtaccgggatctggtacacgaagggaagacctcttgatggaaaaagaagagatg
cagcgcgtttggattttgagaaaacttatgtctgacatgacctcccaggaagccatggaa
ttcttgctccaacgaatgagaggcacacgcgacaatgccgaattcttgatcagcatgaac
ggataa
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