Escherichia coli SMS-3-5 (environmental): EcSMS35_A0010
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Entry
EcSMS35_A0010 CDS
T00672
Symbol
traI
Name
(GenBank) type IV secretion-like conjugative transfer relaxase protein TraI
Organism
ecm
Escherichia coli SMS-3-5 (environmental)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TrwC
TraI_C
AAA_30
TraI_2B
ssDNA_TraI_N
AAA_19
AAA_11
Motif
Other DBs
NCBI-ProteinID:
ACB20237
UniProt:
B1LRJ1
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All DBs
Position
pSMS35_130:complement(5854..11124)
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AA seq
1756 aa
AA seq
DB search
MMSIAQVRSAGSAGNYYTDKDNYYVLGSMGERWAGRGAEQLGLQGSVDKDVFTRLLEGRL
PDGADLSRMQDGSNKHRPGYDLTFSAPKSVSMMAMLGGDKRLIDAHNQAVDFAVRQVEAL
ASTRVMTDGQSETVLTGNLVMALFNHDTSRDQEPQLHTHAVVANVTQHNGEWKTLSSDKV
GKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVPVEAFSGRSQT
IREAVGEDASLKSRDVAALDTRKSKQHVDPEIKMTEWMQTLKETGFDIRAYRDAAEQRAY
TRTQTPGPASQDGPDVQQAVTQAIAGLSERKVQFTYTDVLARTVGILPPEAGVIERARAG
IDEAISREQLIPLDREKGLFTSGIHVLDELSVRALSRDIMKQNRVTVHPEKSVPRTAGYS
DAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNLKQDE
RLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQR
TGTGSALMAMKDAGVNTYRWQGGEQRPATIISEPDRNVRYARLAGDFAASVKAGEESVAQ
VSGVREQAILTQAIRSELKTQGVLGHQEVTMTALSPVWLDSRSRYLRDMYRPGMVMEQWN
PETRSHDRYVIDRVTAQSHSLTLRDAQGETQVVRISSLDSSWSLFRPEKMPVADGERLRV
TGKIPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPASLPVADSPFTALKLENGWVETPGH
SVSDSAKVFAAVTQMAMDNATLNGLARSGRDVRLYSSLDETRTAEKLARHPSFTVVSEQI
KAHAGETSLETSISLQKAGLHTPAQQAIHLALPVLESKKLAFSMVDLLTEAKSFAAEGTG
FTELGGEINAQIKRGDLLYVDVAKGYGTGLLVSRASYEAEKSILRHILEGKEAVTPLMER
VPGELMEKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESMRPRV
VGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGNTDM
ARAYALIAAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAADVAIMKEIVRQTPELREAV
YNLINRDVERALSGLERVKPSQVPRLEGAWAPEHSVMEFSHSQEAKLAEAQQKAMLKGEA
FPDVPMTLYEAIVRDYTGRTPEAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGKEQVM
VPVLNTANIRDGELRRLSTWETHRDALVLVDNVYHRIAGISKDDGLITLEDAEGNTRLIS
PREAVAEGVTLYTPDTIRVGTGDRMRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQT
RVIRPGQERAEQHIDLAYAITAHGAQGASETFAIALEGTEGNRKQMAGFESAYVALSRMK
QHVQVYTDNRQGWTDAINNAVQKGTAHDVFEPKPDREVMNAERLFSTARELRDVAAGRAV
LRQAGLAGGDSPARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGE
GRVKGSGDAQFVALQGSRNGESLLADNMQEGVRIARDNPDSGVVVRIAGEGRPWNPGAIT
GGRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLP
DGKTEQAVREIAGQERDRAAITEREAALPESVLRESQREREAVREVARENLLQERLQQME
RDMVRDLQKEKTLGGD
NT seq
5271 nt
NT seq
+upstream
nt +downstream
nt
atgatgagtatcgcgcaggtcagatcggccggaagtgccggtaactattataccgacaag
gataattactatgtactgggcagcatgggagaacgctgggccggcaggggggctgaacag
ctgggactgcagggcagtgtcgataaggatgtttttacccgtcttctggagggaaggctg
ccggacggagcggatctaagccgcatgcaggatggcagtaataagcatcgtcccggctac
gacctgaccttctccgcccccaaaagtgtctccatgatggccatgttaggtggcgataag
cgcctgattgatgcacataaccaggccgtggactttgctgttcgtcaggtggaggcgctg
gcctccacacgggtgatgacggacggacagtcagaaacggtactgaccggtaatctggtg
atggcactgtttaaccacgacaccagtcgcgatcaggaaccacagttacacacgcatgcg
gtggtagctaatgtcacgcagcataacggtgagtggaagacactgagcagtgacaaagtg
gggaaaacggggttcattgagaatgtgtacgctaatcagattgcctttggcaggctctac
cgggaaaaactgaaagagcaggttgaggcgctgggctatgaaacggaagtggtgggtaag
cacggtatgtgggaaatgccgggcgtaccggtggaggccttttccggacgctcacagact
atccgggaggccgtcggggaggacgcctcgctgaaatcccgggatgtggcggcgctggat
acgcgtaaatccaaacagcacgtcgatcctgaaatcaaaatgaccgagtggatgcagacg
ctgaaggaaaccgggttcgatatccgggcgtatcgtgacgcagcggaacaacgggcatat
acccgcacgcagacacccggaccagcttcacaggacgggccggatgtgcagcaggcggtg
acacaggcgattgccggattaagtgaacgcaaagtgcagtttacgtacacggacgtgctg
gccaggacggtcggcatactgccgccggaagccggtgtgattgagcgggcgcgcgccggt
atcgatgaggccatcagtcgtgagcagcttatccccctcgaccgtgagaaggggctgttc
acatcaggaattcatgtgctcgatgagctgtccgtccgggcactcagtcgtgacatcatg
aaacagaaccgggtgaccgtacatccggagaaaagtgtcccccggacggctggttacagc
gatgcggtcagtgttctggcacaggaccgtccgtcgctggccattgtgtccgggcagggc
ggtgcagccgggcagcgtgagcgggtggctgaactggtcatgatggcccgggagcagggg
cgggaggtgcagattatcgctgctgaccgtcgctcgcagatgaacctgaagcaggatgaa
cggctgtccggtgagctgataaccggacgtcgtcagttgctggaaggcatggccttcacg
ccgggcagtactgttatcgttgaccagggcgaaaaactctccctgaaagagacgttaacc
ctgctggacggtgccgcacgtcataacgtacaggtcctgataaccgacagcgggcagcga
accggtacaggcagtgcgctgatggccatgaaggatgccggggtgaacacatatcgctgg
caggggggagaacagcgaccggccaccatcatcagtgaaccggaccgtaatgtccgctat
gcccggctggcaggagattttgcggccagcgtgaaagccggagaagagagcgtggcacag
gtcagcggggtacgggaacaggccatactgacacaggccattcgcagtgagctgaaaaca
cagggcgtgctcggacatcaggaggtgaccatgacggcactgtcaccggtctggctggac
agccggagccgttatctgcgggatatgtaccgcccgggaatggtgatggagcagtggaac
ccggagacacgcagtcatgaccgctatgtgatagaccgggtgacggcgcagagtcacagc
ctgaccctgcgggatgcgcagggtgaaacgcaggtggtgcgtatttcttctctggacagc
agctggtcgctgttccggccggaaaaaatgccggtggcagacggcgagcgtctgagggtg
acagggaaaattcccggactccgcgtctccggcggtgaccgcctgcaggtggcatccgtc
agtgaagatgcgatgacggttgttgtgccggggcgggctgaaccggcctccctgcctgtg
gctgattcaccgttcacggcactgaagctggagaacggctgggtggaaacgcccgggcat
tccgtcagcgacagtgcgaaggtttttgccgccgtcacacagatggcaatggacaacgcc
accctgaacggtctggcccgcagcggtcgtgatgtccggctgtattcctcactggatgaa
acccgtactgcggaaaaacttgcccgccatccctcctttacggtggtttctgagcagata
aaggcgcatgccggtgagacatcgctggaaacctctatcagtctgcagaaagccgggctg
cacacgccggcacagcaggccattcatctggcccttcctgtgctggaaagtaaaaaactg
gccttcagcatggtggacctgctgacagaggcaaagtcgtttgctgcagaaggaaccggt
tttactgaactgggaggggaaatcaatgcgcagataaaacggggtgatttactgtatgtg
gatgtggcaaaaggctatggcacaggcctgctggtttcccgtgcgtcgtatgaggcagaa
aagagcattcttcgccatattctcgaaggtaaggaggcggtcacgccgctgatggagaga
gtacctggcgaactcatggagaaactgacatcaggacagcgtgccgctacccgcatgata
ctggaaacgtccgaccgttttacggtggtgcagggctatgccggcgtgggtaagaccaca
cagttccgggcggtgatgtcagccgtgaacatgctgccggagagtatgcgtccccgtgtc
gtggggctggggcccacgcaccgtgcggtcggggagatgcgcagcgccggcgtggatgca
cagacactggcgtcctttctgcatgacacgcagctgcagcagcgcagcggagaaacgccg
gatttcagcaacacgctgttcctgctcgatgagagctcaatggtgggcaataccgacatg
gcacgggcatacgccctgattgcggccggtggcggtcgtgctgtggccagcggtgacacg
gaccagctgcaggccatcgcgcccggtcagcctttccgtctccagcagacgcgcagtgct
gccgatgtggccatcatgaaggagattgtgcgtcagacgccggaactgcgggaggcggta
tacaacctgattaaccgggatgtggaaagggcactgtccgggcttgagcgtgtgaaaccg
tctcaggtgccacgtctggagggcgcatgggcaccggagcactccgtgatggagttcagt
cacagccaggaagcgaaactggcagaagcgcagcagaaggcgatgctgaaaggcgaggct
ttcccggatgtccccatgacactgtatgaagccattgtccgcgactataccggcagaaca
ccggaagcacgggagcagacgctgattgtcacgcacctgaatgaggaccggcgcgtactg
aacagcatgattcatgatgcacgggaaaaggccggtgagctggggaaagagcaggtcatg
gtgcctgtcctgaacactgcgaatatacgcgacggggagctgcgtcgtctctccacctgg
gagactcatcgggacgcacttgtcctggtggataatgtgtatcaccggattgccggtatc
agtaaggatgacgggctgataaccctggaggatgcggaaggtaacacgcggctgatttcg
ccccgggaggcggtggctgaaggcgtcacactgtacaccccggacaccatccgggtggga
accggtgaccggatgcgcttcacgaagagtgaccgggagcgcggttatgtggccaacagc
gtctggacggtgacagcggtttctggtgacagtgtcacactttctgacggtcagcagacc
cgggtgattcgccccggtcaggagcgggcagagcaacatattgacctggcctatgccatc
accgcccacggtgcgcagggggcaagtgaaacctttgccattgcgcttgaaggcacggaa
ggtaaccggaaacagatggccggctttgagtcagcctacgtggccctgtcgcgtatgaag
cagcatgtgcaggtgtacaccgataaccgtcagggctggacggatgccattaacaatgcc
gtacagaaaggaacggcccacgatgtatttgagccgaaaccggaccgggaggtcatgaat
gcagagcggctgttcagtacggcgcgggaactgcgggacgtggcggcagggcgtgctgtt
ctccgtcaggcggggctggccgggggagacagtcctgcacggtttattgctccgggacgt
aaatatccgcagccgtatgtggcactgccggcgtttgaccgtaacggcaagtccgccggt
atctggctgaacccactgaccacggatgacggaaacgggctgcggggattcagtggtgaa
ggccgtgtgaaaggcagcggggatgcacagtttgtggccctgcagggcagccgtaacgga
gaaagcctgctggctgataatatgcaggagggtgtccggattgcccgtgataatcctgac
agtggtgtggtggtaagaatcgccggtgaaggccgtccgtggaatcccggtgccataacc
ggtggccgcgtgtggggggatatcccggacaacagcgtccagccgggagccggaaatggc
gaaccggtcacggcagaggtgctggcacagcggcaggctgaagaggccatccgccgtgaa
acggaacgccgtgcagatgaaattgtccgtaaaatggcagagaacaaacctgacctgccg
gatggcaaaacagagcaggctgtcagggagattgccgggcaggagcgtgaccgggctgcc
ataactgaacgggaagccgcgctgccggagagtgtgctgcgtgaatcacaacgggagcgg
gaagcggtccgggaggttgcccgggaaaatctgctgcaggagcgtctgcagcagatggag
cgggatatggttcgtgacctgcagaaagagaaaaccctgggtggagactga
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