Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_4857
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Entry
ECRM13516_4857 CDS
T03011
Symbol
hupA
Name
(GenBank) DNA-binding protein HU-alpha
KO
K05787
DNA-binding protein HU-alpha
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
Brite
KEGG Orthology (KO) [BR:
ecoh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ecoh03032
]
ECRM13516_4857 (hupA)
03036 Chromosome and associated proteins [BR:
ecoh03036
]
ECRM13516_4857 (hupA)
03400 DNA repair and recombination proteins [BR:
ecoh03400
]
ECRM13516_4857 (hupA)
DNA replication proteins [BR:
ecoh03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
ECRM13516_4857 (hupA)
Chromosome and associated proteins [BR:
ecoh03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
ECRM13516_4857 (hupA)
DNA repair and recombination proteins [BR:
ecoh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
ECRM13516_4857 (hupA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-CCDC81_euk_2
DUF2267
Motif
Other DBs
NCBI-ProteinID:
AHG17448
LinkDB
All DBs
Position
4821058..4821330
Genome browser
AA seq
90 aa
AA seq
DB search
MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG
RNPQTGKEIKIAAANVPAFVSGKALKDAVK
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagactcaactgattgatgtaattgcagagaaagcagaactgtccaaaacccag
gctaaagctgctctggagtccactctggctgcaattactgagtctctgaaagaaggcgat
gctgtacaactggttggtttcggtaccttcaaagtgaaccaccgcgctgagcgtactggc
cgcaacccgcagaccggtaaagaaatcaaaattgccgcagctaacgtaccggcatttgtt
tctggcaaggcactgaaagacgcagttaagtaa
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