Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_5486
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Entry
ECRM13516_5486 CDS
T03011
Symbol
traD
Name
(GenBank) IncF plasmid conjugative transfer protein TraD
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
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Gene cluster
GFIT
Motif
Pfam:
TrwB_AAD_bind
TraD_N
TraG-D_C
T4SS-DNA_transf
AAA_16
AAA_22
EAD7
Motif
Other DBs
NCBI-ProteinID:
AHG18064
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Position
pO145-13516:complement(43387..45540)
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AA seq
717 aa
AA seq
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MSFNAKDMTQGGQIASMRIRMFSQIANIMLYCLFIFFWILVGLVLWVKISWQTFVNGCIY
WWCTTLEGMRDLIKSQPVYEIQYYGKTFRMNAAQVLHDKYMIWCGEQLWSAFVLATVVAL
VICLITFFVVSWILGRQGKQQSENEVTGGRQLTENPKDVARMLKKDGKDSDIRIGDLPII
RDSEIQNFCLHGTVGAGKSEVIRRLANYARQRGDMVVIYDRSGEFVKSYYDPSIDKILNP
LDARCAAWDLWKECLTQPDFDNTANTLIPMGTKEDPFWQGSGRTIFAEAAYLMRNDPNRS
YSKLVDTLLSIKIEKLRTFLRNSPAANLVEEKIEKTAISIRAVLTNYVKAIRYLQGIEHN
GESFTIRDWMRGVREDQKNGWLFISSNADTHASLKPVISMWLSIAIRGLLAMGENRNRRV
WFFCDELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGEKAAATLFDVMNTRA
FFRSPSHKIAEFAAGEIGEKEHLKASEQYSYGADPVRDGVSTGKDMERQTLVSYSDIQSL
PDLTCYVTLPGPYPAVKLSLKYQARPKVAPEFIPRDINPEMENRLSAVLAAREAEGRQMA
SLFEPDVPEVVSGEDVTQAEQPQQPVSPAINDKKSDSGVNVPAGGIEQELKMKPEEEMEQ
QLPPGISESGEVVDMAAYEAWQQENHPDIQQQMQRREEVNINVHRERGEDVEPGDDF
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgagttttaacgcaaaggatatgacccagggcggtcagattgcgtccatgcgtatccgc
atgttcagccagatcgccaatatcatgctttactgcctgtttatttttttctggatactc
gttggtctggttttatgggtaaaaataagctggcagacgtttgtgaacggctgtatttac
tggtggtgtaccacgctggaaggcatgcgggatttaatcaagtcccagccggtatatgag
atccagtattacggcaaaaccttccggatgaatgctgctcaggtactgcatgataaatat
atgatctggtgcggagagcagctatggtccgcattcgttctggccacagttgtggcactg
gttatttgcctgattaccttctttgttgtctcctggattctggggcgtcagggtaaacaa
cagagcgaaaatgaagtcacaggtggtcgtcagctgacggagaacccgaaagacgttgcc
cggatgctgaaaaaagacggcaaggactccgatatacggattggcgacctgccgattatc
cgggattccgaaatccagaacttctgtctgcacggcacggtcggggccggtaagtcggaa
gttatccgtcgtctggccaactacgcccgtcagcgtggagatatggtggtgatttatgac
cgttcaggggaatttgttaaaagttactatgatccctccatcgataaaatcctgaatccg
ctggatgcccgctgtgccgcctgggatttgtggaaggagtgcctgacacagccggatttt
gataataccgcgaacacgctgatcccgatgggcacaaaagaggacccgttctggcagggt
tcaggacgtaccatttttgcggaagcggcgtacctgatgcgtaatgaccccaaccgcagc
tacagcaaactggtggacacactgctttccatcaaaatcgaaaaactgcgtaccttcctg
cgtaattcaccggcggccaacctggtggaagagaaaattgagaaaacggctatttccatc
cgtgctgtgctgaccaactacgtgaaagccatccgttacctgcaggggattgagcataac
ggtgagtcttttaccatccgtgactggatgcggggtgtccgggaagatcagaaaaacggc
tggctgtttatctcgtcgaatgccgacacccatgcctccctgaagccggtgatctccatg
tggctgtccattgccattcgtggtctgctggcaatgggagaaaaccgtaaccgtcgtgtg
tggtttttctgtgatgagctacccacgttacacaaactgccggacctggtggagatcctg
ccggaagcccgtaagttcggtggctgttatgtgtttggtatccagtcctatgcccagctg
gaagatatctacggtgagaaagcggctgccacgctgtttgacgtcatgaacacccgtgcc
tttttccgttctcccagccataagattgcagagttcgctgccggtgagattggtgagaaa
gagcacctgaaagccagcgagcagtattcctacggtgctgatccggtacgtgacggggta
tcgaccggtaaggatatggagcgccagacgctggtcagttattccgacattcagtctctg
ccggatctgacctgttatgtcaccttgcccggaccgtatccggcagtaaaactctcactg
aaatatcaggcacgtccgaaggttgcccctgagtttattccgcgtgacatcaacccggaa
atggagaaccgtctgagtgccgtacttgccgcaagggaagcagaaggtcgtcagatggcc
agcctcttcgaaccggatgtgccggaagttgtttccggagaagacgtgactcaggctgaa
cagccgcaacagccggtgtctcctgccatcaacgataagaagtcagattcaggtgtgaat
gttccggcaggggggatcgagcaggagctgaaaatgaaaccggaagaagagatggaacag
caactgccacccgggatcagtgaatccggtgaagtggtggatatggccgcttatgaggca
tggcaacaggaaaatcatccggacatccagcagcagatgcagcgtcgtgaagaggtgaac
attaatgtgcaccgggagcgtggggaggatgttgagccgggagatgatttctga
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