Escherichia coli O145 H28 RM13516 (EHEC): ECRM13516_5583
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Entry
ECRM13516_5583 CDS
T03011
Symbol
nikB
Name
(GenBank) relaxase
Organism
ecoh
Escherichia coli O145:H28 RM13516 (EHEC)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LPD7
Motif
Other DBs
NCBI-ProteinID:
AHG18161
LinkDB
All DBs
Position
pRM13516:16102..19905
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AA seq
1267 aa
AA seq
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MIVRYGGGNDGIVDYLINGRKAERQYTRDELDHRVVLDGDLQTTDKIINSIEDNKQDRYL
HITLSFHESHVSNEMLKAVVDDYKKLLMNAYHPEEYSFYAEAHLPKIRHIQDNSTGELIE
RKPHIHIVIPKVNLVTGDKLDPVGLIGKGHTIEQLDAIQEHINNKYNLASPKDFPRKNSD
YSVILKRVKADLDVERNSAFKNELNYRIEKEKVSDYAVFKQIVAEYGEVRIRNEGKASEY
IAVKLPGDKKFTNLKSPLFRKNYIEEGKLTLQKPTPKQIEKRLNTWVNKTSHEIKHVFLN
ASVRKDYTSLSEAEQIEFLKERIKEYDSREKLNERNSQQTSGRAGGYKSCPKKFARIRQS
EATVGLSRMPQRGMVYGINGFTRPDSISVLSDISQRDLAEQLPQREHPGQDVRRDYDRQF
TESGIKSLERSSFLCETMFQTLNEAAEKNEITTMAEIRRNIDPVRFLSSAAERFNIIPAQ
HKIRTAKDGSPRFSVGNRNMNASDFLTKHINLAWKDAKSFLLEVYSQQLENTPYTRYPTY
RRLTHHEARERLNSLNLSEKTLRNTIRFERGKLYNDLREMRRELKLIPREQRDIAVGVIV
YKKLTTLERLSELDTEGRHIIRQYHADWHKDKDEMKALERLKSYLNFDEINAISADEPEL
SLQKAVDSQRRLEEAKKVNSKLKDLVMDKQDSRIVYRDQESEKPVFTDKGNFVVAGKNPS
KEEIGIMLEYSREKFGGVLKLTGSEDFKKMCAEVAAEQDMKIILRPEQYQQMMLELKAEL
QGNKFEQVETQENSQESESRIEKGDALKEQATEQEQATEQEQATEQEQATEQEQATEQEQ
ATEQAQATEQAQATEQAQATEQAQVAEQAQATEQAQATEQAQATEQAQATSSYDPGVITR
ANTLDSQMLSKGTNGEFGYLKSLDSDENEIWEVLGHVPGDSDDIFDVASFDNENDAKEFC
KIVNELGIDRTQALIHEQLSSQQEQAAVQETYQESPEEILASISANEHMISGLENFLVKD
RSQFSSCNGDIVVEAEITRGEGGLYHLAVAGKHGLERGDAVARVDVTEQQFAAITGKTPS
EVLTGDQTSARVPVITGIHFSTRAIENVNKLEQQKDYVYFSTHEGLNAEIKDFSSLKDAI
EWGRVECELHDLNKRDTVIYRVESEHISQGIDAVMKNAERVERHEIEKAQGRDCTPEDGK
ILEAIDRFEDKFRGEGLKFEREKAESDLLNHGFTREMAEDALGKQFVQAREDHQESQQQR
DDSQDMH
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgattgtcagatatggtggtggtaatgacggtattgttgattacctgataaatggtcgc
aaagcagaacgtcagtacacacgtgatgaacttgatcatcgtgttgttcttgatggtgat
ctccagactacagataagattatcaattctattgaagacaacaaacaggaccgttatttg
cacattacgttgtcttttcatgaaagtcacgtatcaaatgaaatgttaaaggcggttgtg
gatgattataaaaaattattgatgaatgcttatcatcctgaagaatattctttctatgct
gaagcacatttgccaaaaatccggcatattcaggataatagtacaggagagttaattgaa
agaaagcctcatattcatattgtcattccaaaggttaatctagttacaggagataaactt
gatcctgttggccttatagggaaaggtcatactatcgaacagctagatgcaatacaggag
catattaacaataaatataatcttgccagcccgaaggactttccgagaaaaaatagcgat
tatagtgttattttaaagagagtaaaagcagatcttgatgtagagcgtaattctgcattt
aagaatgaattgaattatcgaattgaaaaagaaaaagtaagtgattatgctgtattcaaa
cagattgttgcagaatatggtgaggttaggataagaaatgaaggaaaggccagtgaatat
attgctgttaagttaccgggagataaaaagttcactaatctgaaaagcccgttgtttcgt
aaaaactatattgaagagggaaagttgactcttcaaaaacctacgcctaagcaaatagaa
aaacgtctcaatacctgggtaaacaaaaccagtcacgagattaaacatgtttttctcaac
gccagcgttcgtaaggactatacaagtttatctgaagcagagcagattgaatttctgaaa
gagaggataaaagaatatgactcaagagaaaaacttaacgaaagaaattctcagcaaacg
tcaggacgagcgggaggttacaagtcgtgtcctaaaaagtttgccagaatccgtcaatct
gaagcaacagtcggattgtcacgtatgccccaacgcggtatggtttacggaatcaatgga
ttcacaagacccgactctatcagtgtattgtcagatatttcgcagcgtgatctggcagag
caattaccgcaaagagaacatcctggtcaggatgtgcgacgggattatgatagacaattc
acagagtcaggaataaaaagtcttgaacgctcttcttttttgtgtgaaacgatgtttcag
actctgaatgaggcggcagagaaaaacgaaattacaacgatggcagaaattcgcagaaat
attgatcctgtcaggtttctgtcttctgccgccgagcgttttaatattattccagcgcag
cataaaatcagaacagcaaaggacggctccccccggttttctgtggggaatcgtaatatg
aacgcatctgattttctgacaaagcatattaatcttgcctggaaagatgcgaaatccttt
ctgcttgaagtttattcacagcagttagaaaacacgccatatacgcgctatccaacctac
agacgccttacgcatcatgaagcccgtgagcgtcttaactcactgaatttatcggaaaaa
acattacgaaatactatcaggtttgagcgtggcaagctgtataatgatctgcgagagatg
agacgcgagttgaagttaataccacgtgaacagcgtgatattgccgtgggtgtgattgtt
tacaaaaaactaaccacacttgagcgtctttctgaactcgacacagaggggcgacacata
attcgtcaatatcatgctgactggcataaggataaagatgaaatgaaagcccttgaacgt
ctcaaaagctatctcaacttcgatgaaatcaacgccatttctgctgacgaacccgaactt
tcgcttcagaaagcggtggattcccagcgccgcttagaagaggcgaaaaaggttaactcc
aaactaaaagatcttgtgatggataagcaggattccaggattgtttatcgcgatcaggaa
tcggaaaagcctgtctttaccgacaaagggaactttgtcgttgcgggtaaaaatccctca
aaagaagagatcggaataatgcttgagtattccagggaaaagtttggtggtgtactcaaa
cttaccggctctgaagatttcaaaaaaatgtgcgctgaagttgccgcagagcaggacatg
aagattattttacgcccggagcagtatcaacagatgatgctggaattaaaagcagaactt
cagggtaataagtttgagcaggtggaaacacaggaaaatagccaggagtccgaatccaga
atagagaaaggtgatgcattgaaggaacaggccaccgaacaggaacaggccaccgaacag
gaacaggccaccgaacaggaacaggccaccgaacaggaacaggccaccgaacaggaacag
gctaccgaacaggcacaggccacagagcaggcacaggccacagagcaggcacaggccaca
gagcaggcacaggtcgcagagcaggcacaggctacagagcaggcacaggctacagagcag
gcacaggctacagagcaggcacaggccacatcttcatatgatcctggtgttattaccagg
gcaaacaccctggattcacagatgcttagtaaaggcacaaatggtgaatttggctatttg
aaatctctggatagtgatgaaaatgagatttgggaagtgctggggcatgtacctggagac
agcgatgatatttttgacgttgccagttttgataatgaaaacgacgcaaaagaattctgc
aaaattgttaatgagttaggtattgacagaacacaggctttgattcatgagcagctttct
tctcaacaggagcaggctgctgtgcaggagacgtaccaggaatcaccagaagagatactc
gccagtatttcagctaacgagcatatgatctccgggcttgaaaacttcctggttaaagac
cgttctcagttcagttcctgcaatggggatatcgttgtggaggcggaaattaccaggggg
gaaggtggtctttatcaccttgcggtcgctggtaagcatggcttagagcgtggtgatgca
gttgccagagtggatgttacggagcagcaatttgccgcgatcactggaaaaacaccttct
gaagttttaacgggggaccaaacatcggctcgtgttccggtaattacaggtatccatttc
agtacaagggctattgaaaatgtgaataaactggaacaacagaaggattatgtctatttc
tcaacacatgaaggcctgaatgctgaaataaaagatttcagctctctcaaggatgctatt
gagtggggccgggttgaatgcgagctacatgatctcaataagcgcgatactgtcatttat
cgcgtcgagtctgaacatatttctcaggggattgacgctgtaatgaaaaatgctgaacgc
gtggagcgtcatgaaattgagaaagcacagggacgggattgcacgccggaagacggcaag
attcttgaggcaattgatcgctttgaggacaagttcagaggggaaggactgaagttcgaa
agggagaaggccgaatccgatttgcttaatcacggattcactcgtgaaatggcagaagat
gctcttggaaaacaatttgtccaggccagagaagatcatcaggaatcgcagcagcagcgt
gacgattcacaggacatgcactaa
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