Etheostoma cragini (Arkansas darter): 117950628
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Entry
117950628 CDS
T07493
Symbol
usp13
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 13 isoform X1
KO
K11836
ubiquitin carboxyl-terminal hydrolase 5/13 [EC:
3.4.19.12
]
Organism
ecra
Etheostoma cragini (Arkansas darter)
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ecra01002
]
117950628 (usp13)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ecra04121
]
117950628 (usp13)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ecra04147
]
117950628 (usp13)
Enzymes [BR:
ecra01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
117950628 (usp13)
Peptidases and inhibitors [BR:
ecra01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
117950628 (usp13)
Ubiquitin system [BR:
ecra04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
117950628 (usp13)
Exosome [BR:
ecra04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
117950628 (usp13)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
UBA
zf-UBP_var
zf-UBP
UCH_1
UBA_4
Motif
Other DBs
NCBI-GeneID:
117950628
NCBI-ProteinID:
XP_034737781
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All DBs
Position
9:13464239..13491263
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AA seq
862 aa
AA seq
DB search
MAADLGELLVPYMPTIRVPKTGDRVFKSECAFSFDSPESEGGLYVCMNTFLGFGREHVER
HYRKTGQSVYMHLKRHVKEKATGAAGGAIPRRRNGKVFLDLELNRDFNGEDYEYEDEVKL
VIFPDHFEIALPNIEELPALVTIACDAVLNAPSAYKKQELESWDEEIQVSRHARSLRQLD
NGVRIPPSGWKCQKCEMRENLWLNLSDGAVLCGKWFFDGSGGNGHALDHYKETKYPLAVK
LDTITPDGADVYSFEEEEAVLDPHVSEHLSHFGIDMLQMQKRTENGHHTDNNPRPRVSEW
EVIQESGMKLKAVFGSGYTGIKNLGNSCYLGTVLQVLFSIPDFQRMYVGNLQRIFDYSPL
DPTQDFATQMAKLGHGLLSGQYSKPPMKSELIEQVMKEEYKVLNWHQQKGVSPRMLKALV
SRGHPEFSSNRQQDAHEFLLHIINVVERNSAGSENPSDVFRFLVEERVQCCQTRRVRYTQ
RVDYCIQLPAPIEAATNREELLAYEAKKRDAEENMQALPEPVRARIPFTACLQAFTEPEN
VPDFWSSALQAKSAGIKTSRFASFPEYLVLQIKKFTFGVDWVPKKLDLAIDVPDFLDLSR
LRATGLQASEEELPDLMPPIVLPEDTRDNSMGSMDSPEIDEAAVMQLAEMGFPLEACRKA
VYYTGNMGPEMAFNWIIAHMEEPDFAEPLTLPSMMDPGPSTSDSPMGATLLGNSPPEESI
AILTSMGFPRAHSIQALKATNNNLERALDWIFTHPEEESDALSDMADTEPNGNVLSNANS
HSDPTLSPDRDTSGPRVKDGPGRYELFGFISHMGTSTMSGHYVCHIKKEGRWVIYNDHKV
CLSERPPKDLGYIYFYHRLSSS
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagacctcggagagctgctggtcccatacatgcccaccatcagagtgcccaaa
acaggagacagggttttcaagagcgagtgcgccttttccttcgactctccagagtcagag
ggaggcctgtatgtgtgtatgaacacattcctgggctttggacgggaacatgtggagaga
cattatcgcaaaacaggacagagcgtttacatgcacctcaaacgacatgtcaaagagaaa
gccacaggagctgcaggaggcgccatccccagacgaagaaatggaaaagtgtttctagat
ttagagctaaaccgtgattttaatggagaggactatgaatatgaagacgaggtcaagctt
gtcatttttccagaccacttcgagatcgccttaccaaatattgaggagttgcctgctctg
gtgaccattgcctgtgatgcagtgctcaatgcaccatcagcttacaagaagcaggagctt
gaatcctgggatgaggagatccaggtgtccagacatgccaggagcctcagacagctggat
aatggggtcaggatcccacccagtggctggaagtgtcaaaagtgtgagatgagagaaaac
ctgtggctgaacctgtcagatggagcagtgctctgtgggaagtggttctttgatggaagc
ggaggcaacggccatgctctggaccattacaaagagaccaaataccccctggctgtcaaa
ctggacaccatcacccctgacggagcagatgtctactcatttgaggaggaggaagctgtg
ttggatccccacgtatccgaacacttgtcacactttggaatagacatgctacagatgcag
aaaagaacagagaatggtcaccacacagacaataacccccggccacgggtcagtgaatgg
gaggtgatccaggagtcgggcatgaagctgaaagcggtgtttggctctggttacacaggc
atcaaaaacctgggaaacagctgctacctcggcacagtgctacaggtcctcttcagcatc
ccagactttcagaggatgtatgttggtaatcttcagagaatatttgactattcgcccctt
gaccccacccaggacttcgccacacaaatggctaaactgggacatggactgctctcaggc
cagtactccaaaccacccatgaaatctgagctcattgaacaggtgatgaaagaagaatac
aaggtattaaactggcaccagcagaagggcgtctctccccgaatgttaaaagccttggtc
agcagggggcacccagagttctcctccaacagacaacaagatgcccacgagttcctcctg
cacattataaatgtggtggagaggaacagtgcaggctctgagaacccaagtgatgtcttc
cgcttcctggtggaggagcgagttcagtgctgccagacacgtcgggttcgttacactcag
cgggtggactactgcatccagctgccagctcccattgaggcggccaccaatcgagaagag
ctgctggcatacgaggccaagaagagggacgctgaggagaacatgcaggctcttcctgag
ccagttagagcacggatccccttcactgcctgcctgcaggccttcacagagccggagaac
gtccctgacttctggagctcagcgctgcaggcaaagtcagccggaatcaaaacttcccgt
tttgcctcattcccagagtatctggttttgcagataaaaaaattcacatttggagttgac
tgggtgccgaagaaactagacttggccatagatgttccagactttctggatctgagccgg
ctgcgggccactgggctgcaggcgagtgaagaggagctgcctgaccttatgcctcccatc
gtgctacctgaagataccagagataactccatgggctccatggactctccagaaatagac
gaggcagcagtaatgcagctggcggagatgggctttccgctcgaggcctgtaggaaggcg
gtctactacacaggcaacatgggcccagagatggccttcaactggatcattgcacacatg
gaggagcctgactttgcagaacctctcactctgccctccatgatggatccgggtccttcc
accagcgacagccccatgggcgccaccctgttgggcaactcgccccccgaggagagcatc
gccatcctcacttcaatgggctttccccgcgcccacagcatccaggcacttaaagccacg
aacaacaacctcgaacgagcactggactggatcttcacccacccagaggaggagagtgac
gccctttcagacatggccgacacggagcccaacggcaacgttttgtctaacgccaactca
cacagcgaccccacactgtccccggacagagacacgtcgggccctcgggtcaaagacgga
ccgggacgttatgagctctttggtttcatcagtcacatgggaacatccacgatgtctgga
cattatgtttgtcacatcaaaaaggagggaaggtgggtgatctacaacgaccacaaagtg
tgtttgtcagaaaggcctccaaaagacttgggctacatctacttttaccatcgactgtct
agcagttaa
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