Etheostoma cragini (Arkansas darter): 117958929
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Entry
117958929 CDS
T07493
Symbol
rxraa
Name
(RefSeq) retinoic acid receptor RXR-alpha-A isoform X1
KO
K08524
retinoid X receptor alpha
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03320
PPAR signaling pathway
ecra04148
Efferocytosis
ecra04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117958929 (rxraa)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
117958929 (rxraa)
03320 PPAR signaling pathway
117958929 (rxraa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117958929 (rxraa)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ecra03310
]
117958929 (rxraa)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
117958929 (rxraa)
Nuclear receptors [BR:
ecra03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
117958929 (rxraa)
BRITE hierarchy
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GFIT
Motif
Pfam:
Hormone_recep
Nuc_recep-AF1
zf-C4
Motif
Other DBs
NCBI-GeneID:
117958929
NCBI-ProteinID:
XP_034751585
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Position
16:complement(7422985..7538255)
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AA seq
504 aa
AA seq
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METKPFLSLGFLKPQCSLAPPMQRGRSAEACSCFSGMCPLHQRRLSSDSSGHLTSSPLGS
PTSHRGMHPSLLSPTSMGPSGSLHSPISTLSSPMNGLASPFSVISSPMGPHSMNSPGMGY
GPSVSPQMFQLNSPMNSVSSTEDIKPPLGLNGVMKVPAQPSGTMLSLTKHICAICGDRSS
GKHYGVYSCEGCKGFFKRTVRKDLSYTCRDNKDCVIDKRQRNRCQYCRYQKCLAMGMKRE
VLLHAAVQEERQRAKERNENEVESTSCANEDMPVEKILEAEQAVEPKTETYIETNLGVPS
NSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLDDQVILLRAGWNELLIASFSHRSI
TIKDGILLATGLHVHRNSAHSAGVGAIFDRVLTELVSKMRDMQMDKTELGCLRAIVLFNP
DSKGLSNPGEVEALREKVYASLEAYCKQKYPDQPGRFAKLLLRLPALRSIGLKCLEHLFF
FKLIGDTPIDTFLMEMLEAPHQMT
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggaaaccaaaccgttcctgtcattggggttcctgaagccccagtgctcgttggctcct
cccatgcagcgaggccgctcggccgaggcttgttcctgtttcagcggcatgtgtcccctc
catcagcgccgcctatcctcagactcgtcggggcacctgacgtcctcgcccctgggctca
cccacatcccaccggggaatgcacccgtctctgctcagtccgacgtccatggggccctcc
ggctctcttcactctcccatcagcacgctgagttcgcccatgaacggcctggcctccccc
ttctctgtcatcagctcgcctatgggtccccactccatgaactcacccggaatgggctac
ggccccagtgtcagcccccagatgttccagctgaactcgccgatgaactcggtcagcagc
acggaggacattaagcccccgctgggcctcaacggcgtgatgaaggtgcccgcccagccc
tcaggcaccatgttgtcgctcaccaaacacatatgcgccatctgtggtgaccgctcctca
ggtaaacactacggagtatacagctgtgagggctgcaaaggttttttcaaaaggacggtg
cgcaaagacctgagctacacctgccgcgacaacaaggactgtgtcattgacaagcgccag
aggaatcgctgccagtactgccgataccagaagtgtttagccatgggcatgaagagagaa
gttttgttacatgcagccgttcaggaggagcgccagcgagccaaggagaggaatgagaac
gaggtggagtccaccagctgcgccaacgaggacatgcccgtggagaagattctggaggcg
gagcaggcggtggaacccaaaaccgagacgtacatagagaccaaccttggggtgccatct
aactcgcccaacgacccggtaacaaatatctgtcaggcggctgacaaacagctctttact
ttggtcgagtgggccaagaggatcccccacttctctgagctgccactggacgaccaggtc
atccttctacgagcaggttggaatgaacttctcattgcatcattttcgcaccgttcaata
acgattaaagacgggatcctgttggcgacagggctgcacgtccaccgcaacagcgcccat
agtgccggagtgggagccatctttgacagggtgctcacagaactggtgtcaaagatgagg
gacatgcagatggataagacggaactggggtgccttcgagctatagtccttttcaaccca
gactctaaaggtctgtccaatccaggtgaggtagaagctctgagagaaaaagtgtacgcg
tctttagaggcctactgcaaacagaagtaccccgaccagcctggcagatttgccaaactg
ttgttgcggttaccagcgctgcgctccatcggcctcaagtgtctggagcacttgttcttc
ttcaagctcatcggcgacacgcccattgacaccttcctcatggagatgctagaagccccc
catcaaatgacataa
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