Etheostoma cragini (Arkansas darter): 117961539
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Entry
117961539 CDS
T07493
Symbol
arid1b
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ecra
Etheostoma cragini (Arkansas darter)
Pathway
ecra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ecra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117961539 (arid1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ecra03000
]
117961539 (arid1b)
03021 Transcription machinery [BR:
ecra03021
]
117961539 (arid1b)
03036 Chromosome and associated proteins [BR:
ecra03036
]
117961539 (arid1b)
Transcription factors [BR:
ecra03000
]
Eukaryotic type
Helix-turn-helix
ARID
117961539 (arid1b)
Transcription machinery [BR:
ecra03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117961539 (arid1b)
Chromosome and associated proteins [BR:
ecra03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117961539 (arid1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
117961539
NCBI-ProteinID:
XP_034756185
LinkDB
All DBs
Position
18:4212071..4237358
Genome browser
AA seq
1824 aa
AA seq
DB search
MDQIHNSHEGFNNNSNSPYNNHYPNYRPGYGNSGYAGIMSPSRQGNNLMGPGTKAAMIAT
NSPAGSGGFQQRFPGQQCPQQQHPSGATPTLNQLLRSPSPMMRGYGSGYPDYNVNSSQQQ
QLTIAKDIQYGSATHGWGQQQRSHPAMSPGNNGQGGGRPQVPAMDPMGMKRSQLYGMSNN
PYSQQQGAPYSGQPYGAPSPQRYPMGMPSRGQMGMGGMQYPQQQMGSQYSQQQQSMGSYS
QPGQPPYFSPPQQQPAAPSQPPYMQPRPLPQQEVPQEAYGGRGQSAAMTPGKPNHEEMNL
SQQERPSSLPDLSGSIDDLPTGTEAAVTSGASGSGSAQGDQGTPARSPFSPHVSPRLPPP
ARSGPSPSPSLSPAGSSNQSRSGPMSPATSGPGSQLAPQLSGPGSDVGLHPSHSAMTQDR
GFPPSMQRSTLGHQFDSQQSAPPMSPHTAPGGPMHHSSYQQGASYAHYGPPGNYPRPPHY
GGAPSANYSGPGPGLANSLGLNASSPMHGQGPSTPAGRGPGPGAGGRSYPAGGSTMAPTS
PGMPQPAGQGMGPPGPNASSKQPEVGPNVGPSANANAAQSRQGSYLGMAQMGGMGGGLYS
QQNSSKSGRMTPQGPPYNATSSGAGVMMPADGTGLVELGYEPPKTKPPVSPSTAGLSLCP
GEDADSISSSAWAKTTTSSKQNVATMTNEKITRLYEMGGEPERKLWVDRFLSFMEERGTP
VPNLPAVGRKPLDLCRLYLAVREIGGLAMVNKNKKWRELSSLLSVGTSSSSASSLKKQYI
QYLFAYECKVERGEEPPPEAPGCARDTKKPPTLQAKIQPPSPANSGSLQGPNITPSEAPG
NLKPPTPASTPHSHMGPQPSTPNMAGVSVLDPFSEGSDPAFHNKRGPGLRNAPYQQGGGP
TDPSMRMQYNANKDPYGGPRKGPGPGEAFGPGQMPSGAMQDGYPHGPSSGPLTGMDPRPQ
YPYGPGYERRPDHVLGPDGGLAPPGGQSSMAPSGGEAGMYPANRYTQQRHGHDGYGKQYP
HGMAYSSHQPLHPPQQGYKRAMEGIYPPAKRHEGEVFAAQQFGSQQPDMFGPYGGGSDSG
GGYLGSEQRPVQGQYPYPYTRERQQGTMGPGEGPQPNTWPPRTDYAYSRQGQGPAYPNVS
RGDEQEGRAPQDSQWPPGHPSQCQTPYPHSASRSMSPLPSRQPPSSFQALPTAQNHVSRS
HSPSSFPRPPPGSLSPNSAPYLPSMKKPGPSAPQGPPIIHGEVSFPPGSVEATVPKLKPR
RRLTAKDTGTPEAWRVMMSLKSGLLAESTWALDAINILLYDDSTVGSFRLSQLPGFLELI
VEFFRRCLIDIFGILVEYEVGAEGQRTLLGPLPDPPKEKEEEVKETPSHGQTAEAQKTPK
TEERTLPAAADIDKEGAVVKQEVQLEPRPQQASKFDKLPILVEEEGGEWEELERRWAELS
QSNGFISGLLHWKAGGGDSTAHIQTGDTIAVERGRGDERGGEEDEETTPEIQKGYLWEGG
RPSPLSELEDEPRCWDEAPLSTAEWWQDSLARRCLCVSNIVRSLSFVPGNDAELSRHAGL
VLILGRLVLLHHQHTPRKRTAPGVQQVEEAGLACSRDEWRWDCLAALRENTLVTLANMAG
QLDLSLYPESICLPLLDGLLHWMVCPAAAAHDPLSASALSPHRLALECLCKLSIQDGNVD
LLLATLPFSRQQTLYAALLRLVGERRSQVCREMAVALLSNLAQGDAAAARAVVLQKGSVG
TLIGFLEDAVAAAQFHQSSHAGEPPSVNMMCRAARALLAMARAEDNRTQFVLHESRLLDV
SLSAALDASVTAVMCEVLFKIGRS
NT seq
5475 nt
NT seq
+upstream
nt +downstream
nt
atggatcagattcacaactcccacgaaggcttcaacaacaacagcaacagcccatataat
aaccactacccaaactatagacccggctatgggaatagtggatacgcgggaataatgagt
ccctcgcgccaggggaataacctgatgggcccgggaaccaaagcggctatgattgctaca
aactccccggctggaagcggagggtttcaacaacggtttcccggacaacagtgtccgcag
caacagcacccttccggagctacaccgactctaaaccagttattgaggtctcccagcccg
atgatgcgcggttatggaagtggctatcctgattataacgttaattcttcacaacaacag
cagctaacgatagctaaagacattcagtacggctcggctactcacggctggggacaacaa
caaagaagtcacccggccatgagcccggggaacaacgggcagggcggtggcagacctcag
gtgccggcaatggacccgatggggatgaagcgctcgcagctttacggcatgagcaacaac
ccgtactcccagcagcagggtgcgccgtactcgggccagccctacggtgctccgtccccc
caaagatacccgatggggatgcccagccgggggcagatggggatgggagggatgcagtac
cctcagcagcagatgggttctcagtacagccagcagcaacagagcatgggtagttactct
cagccaggtcagcctccgtacttcagccctccacagcagcagcccgctgccccaagccag
ccgccgtacatgcagccacgcccactgccacaacaggaggttcctcaggaggcttacggg
gggcgcggccagtctgctgctatgactcctgggaaaccgaaccatgaggagatgaatctg
agccaacaggagaggccgtccagcctgccggatttatccggttccattgatgacttgccc
acgggcacagaggcagcggtgacttcaggagcgtcgggctccggcagcgctcagggcgac
caggggaccccggcccgttctcctttctccccccacgtctcccctcgcctccccccgcct
gctcgctccgggccctccccttcaccctcgctgtccccagccggctcgagcaaccaatca
cgatcaggaccgatgtcccccgccaccagcggaccaggctctcagttggcccctcagctc
tctggtcctggatcagacgttggtcttcatccctcccattcggccatgacccaggacaga
ggtttccctccctccatgcagcgaagcactttgggacatcagtttgactcccagcagtcg
gcaccacccatgtcccctcacactgcaccgggggggcccatgcaccatagctcttaccag
cagggggcctcctacgcccactacggccccccaggtaactaccctcgacccccccactat
gggggggcccccagtgccaactacagcggcccgggccccggcttagccaacagcctgggt
ttgaacgccagtagtcccatgcacggccagggaccgtctactccagcaggtcgcggccca
ggtcccggagccggggggcggtcttaccccgctggaggaagcaccatggcccctacttcc
cccggcatgccacagcctgccgggcagggcatggggcccccagggcccaacgccagcagc
aaacagcctgaggtcggccccaacgttgggcctagtgccaatgccaacgccgcccagagc
aggcagggcagctacctgggcatggcccagatgggaggaatggggggaggcctgtacagc
cagcaaaacagcagcaagtctgggaggatgactccgcagggacccccctacaacgctaca
tcctcaggcgccggggtgatgatgccagcagacgggactggactggtcgagctcggctac
gaaccgcccaaaaccaagccccctgtgtcccccagcaccgctggtctgtccttgtgtccc
ggggaagacgctgatagcatcagcagctccgcctgggctaagacgacaaccagttccaag
cagaacgtggccaccatgaccaacgagaagatcacccgtctgtacgagatgggcggcgag
ccggagaggaagctgtgggtcgaccgcttcctgtccttcatggaggagcgggggacgcct
gtcccaaacctgcctgccgtggggaggaaacctctggacctctgcaggctctacctggct
gtccgagagatcggaggcctcgccatggtgaataagaataagaagtggagagagttgtcg
tctctgttgagcgtggggacgtccagcagctcggccagctctctgaagaagcagtacatc
cagtacctgttcgcctacgagtgtaaggtagagcgaggggaggagcctccgcctgaggca
ccgggctgcgccagagacaccaagaaacctccgacactgcaggccaagatccagccccct
tccccagccaactcgggctccctgcagggccccaacataactccgtcagaggcccctgga
aacctgaagcccccgacccctgcctccaccccgcacagccacatgggcccccagccctcc
accccgaacatggccggcgtgagcgtcctggacccgttctctgaaggcagcgatccagcc
ttccataacaagcgaggcccgggactccgcaacgccccctaccagcagggagggggcccc
acagacccctcaatgaggatgcagtacaatgccaacaaagacccctacggagggcccagg
aaaggcccggggcccggcgaggcctttggtccgggtcagatgcccagtggtgccatgcag
gacgggtacccccacgggccgtcctctgggcctcttacagggatggaccccaggccccag
tacccctacggccccggatacgagcggaggccggaccatgtcctggggccggatgggggt
ttggcgccccctggaggtcagagcagcatggctccatctggaggtgaggctggcatgtac
ccggccaacagatacacgcagcagagacatggacatgacggttatgggaagcagtatcct
cacggcatggcctacagttcccatcagcccctgcaccctccgcagcagggatacaagcgt
gcgatggagggcatttatccccctgcgaagcggcatgagggtgaggtgtttgcggcgcag
cagtttggctcccagcaacctgacatgttcggtccgtacggtggaggcagcgacagtggg
gggggctacttgggctccgagcagcggccggtgcagggtcagtacccatatccatacacc
cgggagcggcagcagggcacgatgggccccggggaggggccgcagcccaacacgtggccc
cccaggactgactacgcatacagccggcagggccaggggccggcgtaccccaatgtcagc
cgaggagatgagcaggagggccgggcaccgcaggacagccagtggccccccgggcatccc
agccaatgccagaccccgtacccccactccgcctcccgctccatgtcccccctgccttcc
agacagcccccctcctccttccaggccctgcccaccgcccaaaaccatgtgagccgctct
cacagcccttcctcgttcccccgccccccgcccggctccctgtcccccaacagcgctccc
tacctgccctccatgaaaaagccggggccctcagcccctcagggcccccccatcatccac
ggggaggtcagcttcccccccgggtctgtggaggccaccgtccccaaactgaagccacga
cgccggctcaccgccaaggacacaggaaccccggaggcgtggcgggtgatgatgtcactg
aaatccggcctattagcggagagcacctgggctctggacgccatcaacatcctgctgtac
gacgacagcaccgtgggctccttcaggctctcacagcttcctggtttcctggagttgatc
gtggagtttttccgccgctgcctcatcgacatcttcggcatcctggtagagtacgaggtg
ggagccgagggccagaggacgctgctgggaccgctgcctgacccccccaaggaaaaggag
gaggaagtgaaggagacgccatctcacggacaaacagccgaggctcaaaagacaccaaag
acggaggagagaacgctcccagctgcagccgacattgacaaagagggagctgttgtaaaa
caggaagtgcagctggagccccgcccccaacaggccagcaagtttgacaagctgccaatc
ttggtggaggaggagggaggagagtgggaggagctggaaaggcgctgggccgagctgagc
caatcaaacggcttcatcagcggccttctgcactggaaagccgggggaggagactccact
gctcacatccagacgggagacaccatcgccgtggagagggggagaggagacgagagggga
ggggaagaagacgaggagacaacacctgaaatacaaaaaggctacctgtgggaggggggg
cgtcccagcccgctcagcgaactggaggacgagcctcgctgctgggacgaggctcctctg
tccacggctgagtggtggcaggactctctggccagacgctgcctgtgtgtctccaacatc
gtgcgcagcctctccttcgtccccggcaacgacgccgagttgtcacgccacgccggcctg
gtgctgatcctcggccggctggtgctgctgcaccatcaacacacacccaggaaacgcacg
gcgccaggtgtccagcaggtggaggaagcggggctggcgtgcagcagggacgagtggcgc
tgggactgcctggccgcgctacgtgagaacacactggtgacgctggccaacatggcgggc
cagctggacctgtcgctgtacccggagagcatctgcctgccgctgctggacgggctgctg
cactggatggtgtgcccagcggccgccgcgcacgacccgctctctgcctcggcgctgtcg
ccgcacagactggcgctggagtgcctctgcaagctgagcatccaggacggcaacgtggac
ctgctgctcgccacgctgcccttcagccggcagcagacgctctacgccgcgctgctgcgc
ctcgtcggcgagcggcgcagccaggtgtgtcgggagatggccgtcgccctgctgtccaac
ctggcgcagggcgacgctgcggcggcacgtgccgtcgtgctgcagaaaggcagtgtgggt
actctgatcggcttcctggaggacgctgtggccgcggcgcagttccatcagagctcgcat
gccggcgagccaccgagcgtcaacatgatgtgtcgcgccgcccgggcactgctggccatg
gcaagggcggaggacaaccggacgcagttcgtgctgcacgagagccggctgctggacgtc
tcgctgtcggccgcgctcgacgcgtctgtgacggccgtcatgtgcgaagtactctttaaa
atcggccgctcgtga
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integrated database retrieval system
