Elizabethkingia ursingii: BBD34_07465
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Entry
BBD34_07465 CDS
T05036
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ego
Elizabethkingia ursingii
Pathway
ego03410
Base excision repair
ego03430
Mismatch repair
ego03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ego00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BBD34_07465
03430 Mismatch repair
BBD34_07465
03440 Homologous recombination
BBD34_07465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ego03400
]
BBD34_07465
DNA repair and recombination proteins [BR:
ego03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BBD34_07465
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BBD34_07465
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBD34_07465
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DSPc
SIS_2
Motif
Other DBs
NCBI-ProteinID:
AQX08482
UniProt:
A0A1T3FJI7
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Position
1641671..1643380
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AA seq
569 aa
AA seq
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MMQRWIYKPTPSEDVIDSISSSLGFGYLASKILVMRGVDSYQKAREFFKPKASDIHNPFL
MADMQKAVERIATAIENGEKILVFGDYDVDGTTAVALMYLYLSKICDKKYLDFYIPDRNL
EGYGISTEGIDFAKENDFSLIIALDCGIKSSDKVDYANSLGIDFIICDHHLPGDEIPKAA
AVLDPKRKDCEYPYKDLSGCGVGYKLCQALNTIYKISDHELQDLTDLLAISIAADIVPIT
GENRVFAKMGLNKLRKTKRQGLKILIPYEKLQNFTISNIVFEIAPKINAAGRISHGKAAV
ELMIAENAKQAHLIADQIVNLNDERKELDSNMTQQAIDQVIETKQEETFSTIVYQSEWNK
GVIGIVASRLIELYYKPTLVFTDGTNGEMVASARSVADFDLHNALDMCSDLFLKFGGHRA
AAGLSMEKKHFEAFKTKFEETVKNSIKEHQKTPSIEIDAEISLNDLTNDFFQFHRWLAPF
GPENMKPVLVIKNARVSGHVRKIGKQSSHLKFNIIQDSSRKGIECLAFKMGEHATDFKTK
TFDIAFTIEENHWKDNLTYYLNVRDVIFH
NT seq
1710 nt
NT seq
+upstream
nt +downstream
nt
atgatgcaacgatggatctacaaaccgaccccttccgaagacgtaatagatagtatcagc
tcttcgctgggatttggttatttagcatccaaaattctggttatgcggggtgtagactct
taccaaaaagccagagaattcttcaagccaaaagcttctgatatccacaatccctttctg
atggcagacatgcaaaaagcagtggagagaattgccacggccatcgaaaacggagaaaaa
atattagtctttggagattatgatgtagacggtacaactgccgttgcattaatgtacctg
tatcttagtaaaatttgcgacaagaaatatttagacttttatatccctgacagaaatctg
gaaggctacggcatttctactgaggggattgatttcgcaaaagagaacgacttttcatta
atcattgcattagactgtggaatcaagtcttcagacaaggttgactatgccaatagtctg
ggaattgactttatcatttgtgaccatcacctccccggtgatgagattccgaaagcagcg
gcggttcttgatcctaaaagaaaagactgcgaatatccttataaggatcttagcggctgc
ggtgttggttataaactttgccaggcactgaatactatctataaaatttcggatcacgaa
ttacaggatctgacggatcttttagcgataagtattgctgcagatattgtccctataact
ggtgaaaacagagtatttgccaaaatgggactcaataaactgcgtaaaacaaaaagacag
ggattaaagattttaattccttacgaaaagcttcagaactttacaatctcaaatattgtt
tttgaaattgctcctaaaataaatgcggctggtagaatttctcacgggaaagctgctgta
gagctaatgattgcagaaaatgctaaacaagcccacctcatcgctgatcagattgtcaat
ctcaacgatgagagaaaggagttggacagtaatatgacccagcaggcaattgaccaggtt
attgagacaaaacaagaggaaacattcagtacaattgtttatcaatctgaatggaataag
ggtgtaattggtattgttgcatccagactaattgaattatattacaaaccaacattggta
tttaccgatggcaccaatggtgaaatggtagcttcagctcgttctgtagcagacttcgat
cttcacaacgcgttagatatgtgttcagatttattcttaaaatttggaggacaccgtgct
gcagcaggactatctatggagaaaaagcattttgaagcatttaaaacaaagttcgaagag
actgtaaagaactctataaaggaacatcagaaaactccaagtatcgaaattgatgctgaa
atctctctgaacgacctaactaatgattttttccagttccacagatggctggctcctttt
ggtcctgaaaatatgaaacccgttctggtaatcaaaaatgccagagtaagcggccatgta
aggaaaattggaaaacaaagctcccatttgaaatttaatattattcaggattcttccaga
aaaggaatagaatgcctggcttttaaaatgggtgaacatgccactgacttcaaaaccaaa
acttttgatattgcatttactattgaagagaaccattggaaagataatcttacttactat
ctcaatgtaagagatgttattttccattaa
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