KEGG   Eucalyptus grandis (rose gum): 104421226
Entry
104421226         CDS       T03547                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03030  DNA replication
egr03410  Base excision repair
egr03420  Nucleotide excision repair
egr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    104421226
   03410 Base excision repair
    104421226
   03420 Nucleotide excision repair
    104421226
   03430 Mismatch repair
    104421226
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:egr03032]
    104421226
   03400 DNA repair and recombination proteins [BR:egr03400]
    104421226
Enzymes [BR:egr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     104421226
    6.5.1.6  DNA ligase (ATP or NAD+)
     104421226
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     104421226
DNA replication proteins [BR:egr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    104421226
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     104421226
DNA repair and recombination proteins [BR:egr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     104421226
   NER (nucleotide excision repair)
    Other NER factors
     104421226
   MMR (mismatch excision repair)
    Other MMR factors
     104421226
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase ATG16
Other DBs
NCBI-GeneID: 104421226
NCBI-ProteinID: XP_010031411
LinkDB
Position
10:complement(34860544..34869800)
AA seq 813 aa
MFFLRSCCHCRSPRLALNPRLVPPLARPLFSAAKPFSSSSSSSLRRPLSLCSSSSPPPPP
RKRGMSSKPSAFDALMSGARARAAAAAAAKKKPPPPSPKKRKSPDPAPAENPSDASKPDS
VAVEARADESEAVAGGSQLIEEVKGSNPEKCPDQKKAKKGDSSAERVKELKGKIHLLKKK
PADFSPKAVACWGEGERVPFVFVCLAFDLISNESGRIVITDIVCNALRTVMTTTPDDLVA
AVYLLANRIAPAHEGLELGIGDASIIKALAEACGRTDVQIKKQYKELGDLGLVAKASRSS
QSTMRKPDALTVAKVFDTFRLIAKESGQNSQEKKKNHIKALLVAATDCEPQYLIRLLQTK
LRIGLAEQTLLAALGQAAVYAEKHSKPSTDVQSPLEEAAKIVKQAYSILPVYDKIVPALL
TDGVWNLPKLCTFSLGVPVGPMLAKPTKGVSEILSKFQNMVYTCEYKYDGERAQIHYKED
DSVEIYSRNAEHNTGKFPDVVATVSRLKKEAVKSFVLDCELVAYDQEKKKILPFQILSTR
ARKNVVLSEIKVDVCIYAFDMLYLNGKPLIQEQLKLRREHLYDSFKEEPGFFQFATAITS
NDIEEIQTFLDASVNASCEGLIIKTLDRDATYEPSKRSNNWLKLKKDYMDSIGDSVDLVP
IAAFHGRGKRTGVYGAFLLACYDSSNEEFQSICKIGTGFSEAMLEERSASLRSKVIPKPK
TYYRYSDTISPDVWFEPSEVWEVKAADLTISPVHRAAVGTVDPDKGISLRFPRLVRVRED
KAPEQASSSDLIAEMYFAQKHNHPNNKDEDEDD
NT seq 2442 nt   +upstreamnt  +downstreamnt
atgttcttccttcgctcgtgctgccattgccgctctccacgcctcgctctaaatcccagg
ctcgtcccccctctcgctcggcccctcttctccgccgctaaacccttctcctcctcctcc
tcctcctccctccgccgccccctctcgctctgctcctcctcctcgccaccgccgccgccg
cggaagcgcgggatgtcgtcgaagccctcggcgttcgacgccctcatgtccggcgcccgc
gcccgcgccgccgccgccgccgccgccaagaagaagccgccgcctccctcgccgaagaag
cgcaagtcccccgatcccgccccggccgaaaaccctagcgacgcctcgaagcccgattcg
gtcgcggtcgaggctagagccgatgaatcggaggctgtcgccggagggagccagctgatt
gaagaagtcaagggctcgaatccggagaaatgccccgaccagaaaaaggcgaagaaaggg
gattcgtctgccgagagagtgaaggaattgaagggcaaaatccatttgctgaagaagaag
ccggccgatttctccccgaaggccgtggcttgctggggcgagggcgagagggttccgttc
gtatttgtgtgcttggcgttcgacctgatatcgaatgagtcggggaggattgtgattacg
gacattgtgtgtaatgcgttgaggactgtgatgaccacgaccccggatgatttggtcgct
gctgtgtacctgttggccaacaggattgctcccgctcacgaggggctggagctgggaatc
ggggatgcgtcgatcattaaggcgctcgctgaggcctgtggaaggacagacgtgcagatt
aagaagcaatacaaggagttgggagatttgggccttgtcgctaaagcaagtcgatcatct
caatccacaatgcgcaagcctgatgcattaactgttgccaaagtatttgatacgtttcgg
ctcatagctaaggaatcggggcagaatagtcaggaaaagaaaaagaaccatataaaagcg
cttcttgttgcagccactgattgtgaacctcaatatttgatccgcctacttcagacaaaa
ttgaggattggattagcagagcagactctcttagctgcacttggacaagctgctgtatat
gctgaaaaacattctaaaccatccacagatgttcaatctcctcttgaagaggcagcaaag
atcgttaagcaagcgtactccattcttccagtttatgataaaatagttcctgctcttctc
actgacggtgtatggaatcttccaaagttgtgtactttttctttgggggtccctgttgga
cctatgcttgcaaaaccaacaaaaggtgtctcggagattttaagtaaattccagaacatg
gtatacacgtgtgaatacaagtatgatggggagcgtgcacagatacattataaggaggat
gattctgtcgagatatatagtagaaatgctgaacataacactggcaaatttccagatgtt
gttgccacagtatcaagattaaagaaggaagccgttaaatcatttgttctagattgtgaa
cttgtcgcttatgatcaagaaaagaaaaagattcttcctttccagatcctcagtacgcga
gctcgcaaaaatgtagttttgagtgagatcaaggtggatgtttgcatatatgcttttgac
atgctttatttaaatggcaagccacttattcaggaacagctcaaacttcggagggagcat
ctatacgattcattcaaggaagaacctggattttttcagtttgccactgcaataacatct
aatgatatagaggagatacaaacgtttcttgatgcttctgttaatgcaagttgtgaaggt
ttgattatcaaaacgctggatcgagatgctacatatgagccttcaaagaggtcaaataac
tggctgaaattgaagaaagattatatggacagtattggcgattcagtagatttggtgcct
attgctgctttccatggtcgtgggaagcgtacaggtgtgtatggcgcatttctccttgct
tgttatgacagttccaatgaagagtttcaaagcatttgtaaaattggaactggtttttct
gaagccatgcttgaagaacgatctgccagtcttcgctctaaggttattccaaagccaaag
acatattatcgttattcagatacaatcagtccagatgtgtggtttgaaccttctgaggtt
tgggaggtgaaagctgcagatttaactattagccctgttcatcgtgctgcagttggaaca
gtagatcctgataagggaatctctctccggtttcctcgtttagttcgtgtccgtgaagat
aaagcaccggagcaagcaagctcatcagatctgattgcagagatgtattttgctcagaag
cacaatcacccgaataataaagatgaggatgaagatgactga

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