Eucalyptus grandis (rose gum): 104421278
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Entry
104421278 CDS
T03547
Name
(RefSeq) histone deacetylase 9
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03082
ATP-dependent chromatin remodeling
egr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104421278
03083 Polycomb repressive complex
104421278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
egr03036
]
104421278
Enzymes [BR:
egr01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
104421278
Chromosome and associated proteins [BR:
egr03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
104421278
HDAC complexes
Sin3A-HDAC complex
104421278
BRAF-HDAC complex
104421278
REST complex
104421278
SHIP complex
104421278
MiDAC complex
104421278
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
104421278
Heterochromatin formation proteins
Other heterochromatin formation proteins
104421278
Chromatin remodeling factors
NuRD complex
104421278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
104421278
NCBI-ProteinID:
XP_010031477
UniProt:
A0A059ABN0
LinkDB
All DBs
Position
10:4304211..4309841
Genome browser
AA seq
432 aa
AA seq
DB search
MRPKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHTKMEIYRPHKAYPAEL
AQFHSPDYVEFLHRITPDTQHLFPNDLAKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDMFFPGTGDVKEIGGKEGKFYAINVPLKDGIDDTSFTRLFKA
IISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHSECVRFVKKFNLPLLVTGGGGY
TKENVARCWVVETGVLLDTELPNEIPENEYFKYFAPDYSLKIPRGNIVLENLNSKSYLSA
IKVQVLENLRNIQHAPSVQMQEVPPDFYIPDFDEDEQNPDERMDQHTQDKQIQRDDEYYD
GDNDNDHNMDDS
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgcgacccaaggacaggatttcgtacttctacgacggagatgtgggcagcgtctatttc
ggtccgaatcatccgatgaagccgcaccggctctgcatgacccaccatcttgtcctctct
tacgagcttcacacgaagatggaaatttaccggccgcacaaagcctaccccgctgagctc
gcccagttccactctcctgattatgtcgagtttttgcaccggattacacccgacacccag
cacctgttcccaaatgatttggcaaaatataatcttggagaagattgtcctgtctttgaa
aacttgttcgagttttgtcaaatttatgctggtggcacgatagatgctgcaagaagatta
aataatcaactctgtgatatagctatcaactgggctggaggattacatcatgccaagaag
tgtgaagcatctggattctgctatataaatgacctagttttgggaatattggagctgctg
aaatatcatgcacgtgttttatatattgacatagatgtgcatcatggtgatggcgtagaa
gaagccttttacttcactgacagggtaatgactgttagctttcacaaattcggggatatg
ttctttccaggaactggtgatgttaaggaaataggaggaaaagaaggaaagttctatgct
atcaatgtcccactcaaggacggaatagacgatactagcttcactcgacttttcaaggct
atcatttcgaaggtcgtcgaaacataccaacctggtgctattgtactccaatgcggagca
gattcacttgctggggaccgtttggggtgtttcaatctctctattgatggacattctgag
tgtgtaaggttcgtcaagaaattcaatttgccattattggttactggtggtggaggatac
acaaaagagaatgttgctcgatgttgggttgttgaaacaggagttctcttagatacagaa
cttccaaatgagattcctgaaaacgagtatttcaagtactttgctcctgattattcattg
aagattcctcgtggaaatatcgtactcgagaatctaaatagcaagtcctacctcagtgca
atcaaagtgcaagtgttagaaaaccttcgtaatattcaacatgccccaagtgtacaaatg
caggaggttccacccgatttctatattcccgattttgacgaagacgagcagaatcctgat
gaacgaatggatcagcatacccaggacaagcaaatccaacgagatgatgaatattatgat
ggggacaatgataacgaccataacatggatgattcatga
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