KEGG   Eucalyptus grandis (rose gum): 104421278
Entry
104421278         CDS       T03547                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03082  ATP-dependent chromatin remodeling
egr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    104421278
   03083 Polycomb repressive complex
    104421278
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:egr03036]
    104421278
Enzymes [BR:egr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     104421278
Chromosome and associated proteins [BR:egr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     104421278
   HDAC complexes
    Sin3A-HDAC complex
     104421278
    BRAF-HDAC complex
     104421278
    REST complex
     104421278
    SHIP complex
     104421278
    MiDAC complex
     104421278
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     104421278
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    104421278
  Chromatin remodeling factors
   NuRD complex
    104421278
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 104421278
NCBI-ProteinID: XP_010031477
UniProt: A0A059ABN0
LinkDB
Position
10:4304211..4309841
AA seq 432 aa
MRPKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYELHTKMEIYRPHKAYPAEL
AQFHSPDYVEFLHRITPDTQHLFPNDLAKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDMFFPGTGDVKEIGGKEGKFYAINVPLKDGIDDTSFTRLFKA
IISKVVETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHSECVRFVKKFNLPLLVTGGGGY
TKENVARCWVVETGVLLDTELPNEIPENEYFKYFAPDYSLKIPRGNIVLENLNSKSYLSA
IKVQVLENLRNIQHAPSVQMQEVPPDFYIPDFDEDEQNPDERMDQHTQDKQIQRDDEYYD
GDNDNDHNMDDS
NT seq 1299 nt   +upstreamnt  +downstreamnt
atgcgacccaaggacaggatttcgtacttctacgacggagatgtgggcagcgtctatttc
ggtccgaatcatccgatgaagccgcaccggctctgcatgacccaccatcttgtcctctct
tacgagcttcacacgaagatggaaatttaccggccgcacaaagcctaccccgctgagctc
gcccagttccactctcctgattatgtcgagtttttgcaccggattacacccgacacccag
cacctgttcccaaatgatttggcaaaatataatcttggagaagattgtcctgtctttgaa
aacttgttcgagttttgtcaaatttatgctggtggcacgatagatgctgcaagaagatta
aataatcaactctgtgatatagctatcaactgggctggaggattacatcatgccaagaag
tgtgaagcatctggattctgctatataaatgacctagttttgggaatattggagctgctg
aaatatcatgcacgtgttttatatattgacatagatgtgcatcatggtgatggcgtagaa
gaagccttttacttcactgacagggtaatgactgttagctttcacaaattcggggatatg
ttctttccaggaactggtgatgttaaggaaataggaggaaaagaaggaaagttctatgct
atcaatgtcccactcaaggacggaatagacgatactagcttcactcgacttttcaaggct
atcatttcgaaggtcgtcgaaacataccaacctggtgctattgtactccaatgcggagca
gattcacttgctggggaccgtttggggtgtttcaatctctctattgatggacattctgag
tgtgtaaggttcgtcaagaaattcaatttgccattattggttactggtggtggaggatac
acaaaagagaatgttgctcgatgttgggttgttgaaacaggagttctcttagatacagaa
cttccaaatgagattcctgaaaacgagtatttcaagtactttgctcctgattattcattg
aagattcctcgtggaaatatcgtactcgagaatctaaatagcaagtcctacctcagtgca
atcaaagtgcaagtgttagaaaaccttcgtaatattcaacatgccccaagtgtacaaatg
caggaggttccacccgatttctatattcccgattttgacgaagacgagcagaatcctgat
gaacgaatggatcagcatacccaggacaagcaaatccaacgagatgatgaatattatgat
ggggacaatgataacgaccataacatggatgattcatga

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