Eucalyptus grandis (rose gum): 104442084
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Entry
104442084 CDS
T03547
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
egr
Eucalyptus grandis (rose gum)
Pathway
egr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
egr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104442084
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
egr03019
]
104442084
03036 Chromosome and associated proteins [BR:
egr03036
]
104442084
Enzymes [BR:
egr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104442084
Messenger RNA biogenesis [BR:
egr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104442084
mRNA degradation factors
5'-3' decay
Decapping complex
104442084
Chromosome and associated proteins [BR:
egr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
104442084
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
DUF3984
EPL1
CMS1
Motif
Other DBs
NCBI-GeneID:
104442084
NCBI-ProteinID:
XP_010053686
UniProt:
A0A059CIQ4
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All DBs
Position
4:35147909..35154237
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AA seq
514 aa
AA seq
DB search
MMNNRARYPPGIGAGRGVNAGPAFQSRAPQPQYVQRGQLGQLPQYQQNHHQQQPQQHHQQ
HHQQNQQQHHQQQQQHQHQQHQQWLRRTQLGSADSTVDEVEKTVQSEAIDSSSQDWKARL
KIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDI
LARAKNGTGKTAAFCVPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLQIQVM
VTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQ
PSVEQLIRFLPGNRQILMYSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQFYAFVE
ERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVF
HDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNL
ITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacaatagagctaggtatccgccggggatcggcgccggcaggggcgtgaacgca
ggccccgcattccagtcgagggcgcctcagccgcagtatgtgcagagaggccagttagga
cagctaccgcagtatcagcagaatcaccaccaacagcagccgcagcagcatcatcagcag
catcaccagcagaatcagcagcagcatcatcagcagcagcagcagcatcagcaccagcag
catcagcagtggcttaggagaactcaattaggaagcgcagactcgacagtcgatgaggtc
gagaagacggtgcagtcggaggccattgattcgagttcacaagattggaaggcaagacta
aagataccaccacctgatacgcgctacaggacagaggatgtgacagcaactaaaggaaac
gaatttgaggattactttctgaagcgcgagctccttatgggtatttatgagaaaggattt
gaaagaccttctcctatccaggaagaaagcattccaattgctctaactggtagtgacatt
cttgctcgagctaaaaatggaactggaaaaactgctgcattctgcgttcctgccttggaa
aagattgatcaagataacaatgttattcaagttgtcatactcgttcctactcgagaattg
gctcttcagacgtcacaagtatgtaaggagcttgggaagcacttgcaaattcaagtgatg
gtgaccactggtggaaccagcttaaaggatgatattatgcgtttgtatcaacctgttcat
ttacttgttggaacacctgggagaatcttggatcttgcaaagaagggagtgtgcatattg
aaagattgttcaatgcttgttatggatgaggctgataagcttttgtcaccagaatttcaa
ccatcagtggagcagctgattcggtttttgccaggcaatcgtcaaattttgatgtattcg
gccacatttcctgttactgtgaaggatttcaaggatagatatttgcagaaaccttatgtt
attaaccttatggatgagctcacactgaaaggtattactcaattttatgcttttgttgaa
gaacggcagaaggtgcattgtctcaacacactattctcaaagcttcaaatcaaccaatca
atcattttttgcaactcggtcaatcgggtggagcttttagccaagaaaataaccgaactt
ggctactcttgcttctacattcatgccaagatgctgcaagaccatcggaacagagttttt
catgacttccgtaatggtgcctgcaggaatcttgtttgtactgatctattcactaggggt
attgacattcaagctgtgaatgtcgttattaactttgatttccccaagaactctgaaact
tacttgcacagggttggtcgttcaggaagatttggccacctaggtttggctgtcaatctt
atcacatatgaggatcgcttcaacttgtataggattgagcaagaacttggaactgagata
aaacagattcctccacatattgatcaggcaatatattgtcggtga
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