Edwardsiella hoshinae: A9798_05535
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Entry
A9798_05535 CDS
T04508
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
eho
Edwardsiella hoshinae
Pathway
eho03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eho00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A9798_05535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eho03019
]
A9798_05535
Enzymes [BR:
eho01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A9798_05535
Messenger RNA biogenesis [BR:
eho03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A9798_05535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AOV96463
UniProt:
A0A376DCF9
LinkDB
All DBs
Position
1245406..1246764
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AA seq
452 aa
AA seq
DB search
MSFDSLGLCAELLRAVEEQGYRDPTPIQQQAIPLVLQGRDLMASAQTGTGKTAGFTLPLL
QLLHQNPKNSKGRRPVRALILTPTRELAAQIGDNVREYSRHLPLRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK
RQNLLFSATFSDEIKALAASLLHNPAEVEVARRNTASDLVTQHVHLVDKKRKRELLSFLI
GSQDWRQVLVFTRTKYGANHLAEQLNKDGISAAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIDQLPYVVNYELPNVPEDYVHRIGRTGRAQATGEALSLVCVDEHKLLRDI
ERLLKRPIPRMAIAGYEPDPSIKAEPIQNGRQGGRQNGRNERGTQGQGRRGNSARPNGNA
TGEEQRSTTSRQSQHRRPRRPAAEAKGRGVAR
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcccttggcctgtgtgccgaactgttacgtgcggtggaagagcagggt
taccgtgaccccaccccgattcagcaacaagccattccgctggtactgcaaggtcgcgat
ttgatggccagtgcccagaccggcaccggcaagacggctggttttaccttgccgttgctg
caattgctgcaccagaacccgaagaacagcaaaggtcgtcgcccggtgcgcgccctgatc
ctgacaccgacccgtgagttggcggcgcagatcggcgataacgtgcgcgagtatagccgc
cacctaccgttacgctcgctggtggtgttcggtggggtgagtatcaatccacagatgatg
aagctgcgcggtggggtggatgtgctggtggcgacgccgggacgcctgctggatcttgcg
catcagaacgcggtcgatctgtcccaggttgagatcttggtgctggatgaggccgatcgc
atgctggacatgggcttcattcacgatattcgccgcgtgctggcgcgcctgccggccaag
cgtcagaacctgctgttctccgcgaccttctccgacgagatcaaggcgctggccgcctcg
ctgctgcataacccggccgaggtggaagtggcgcgccgcaacaccgcctcggatttggtc
acccaacacgtgcatctggtggacaagaagcgtaagcgtgagctgctctctttcctgatc
ggctcacaggattggcgccaggtgttggtgttcacccgcaccaagtatggcgccaaccat
ctggccgagcagctgaataaggatggcatcagtgcggcggcgatccatggcaacaagagt
cagggcgctcgaacccgtgcgctggcggacttcaagagtggcgacattcgcgtcctggtg
gcgacggatatcgccgcccgtggcttggacatcgatcaactgccttacgtggtgaactat
gagctgcccaacgttccggaagattatgtccaccgtatcggacgtaccgggcgtgcgcag
gcgacgggcgaggcgctctcactggtctgtgtcgacgaacataagctgctgcgtgatatc
gaacgcctgctgaaacgcccgattccacgtatggcgatcgccggttatgagccggacccc
agcatcaaggccgagccgatccagaatggtcgtcaaggcggacggcagaatggccgtaac
gaacggggtacgcagggacaaggacgacgcggcaatagcgctcgtcccaacggtaatgcg
acgggggaagaacaacgtagcacgacgtcccgccagagccagcatcgtcgtccgcgtcgt
ccggcggcggaggcgaaaggacgcggcgtagcgcgttaa
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