Escherichia coli clone D i2: i02_4547
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Entry
i02_4547 CDS
T02004
Symbol
hupA
Name
(GenBank) transcriptional regulator HU subunit alpha
KO
K05787
DNA-binding protein HU-alpha
Organism
eld
Escherichia coli clone D i2
Brite
KEGG Orthology (KO) [BR:
eld00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eld03032
]
i02_4547 (hupA)
03036 Chromosome and associated proteins [BR:
eld03036
]
i02_4547 (hupA)
03400 DNA repair and recombination proteins [BR:
eld03400
]
i02_4547 (hupA)
DNA replication proteins [BR:
eld03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
i02_4547 (hupA)
Chromosome and associated proteins [BR:
eld03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
i02_4547 (hupA)
DNA repair and recombination proteins [BR:
eld03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
i02_4547 (hupA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
HU-CCDC81_euk_2
DUF2267
Motif
Other DBs
NCBI-ProteinID:
AER87064
LinkDB
All DBs
Position
4553316..4553588
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AA seq
90 aa
AA seq
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MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQLVGFGTFKVNHRAERTG
RNPQTGKEIKIAAANVPAFVSGKALKDAVK
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagactcaactgattgatgtaattgcagagaaagcagaactgtccaaaacccag
gctaaagctgctctggagtccactctggctgcaattactgagtctctgaaagaaggcgat
gctgtacaactggttggtttcggtaccttcaaagtgaaccaccgcgctgagcgtactggc
cgcaacccgcagaccggtaaagaaatcaaaattgccgcagctaacgtaccggcatttgtt
tctggcaaggcactgaaagacgcagttaagtaa
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