Erythrobacter litoralis HTCC2594: ELI_04125
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Entry
ELI_04125 CDS
T00315
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
eli
Erythrobacter litoralis HTCC2594
Pathway
eli03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
eli00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
ELI_04125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eli03400
]
ELI_04125
Enzymes [BR:
eli01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
ELI_04125
DNA repair and recombination proteins [BR:
eli03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
ELI_04125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ABC62917
UniProt:
Q2NBM4
LinkDB
All DBs
Position
complement(851129..853648)
Genome browser
AA seq
839 aa
AA seq
DB search
MARRNDPLAIYNSKRDFAKTPEPSGKAESSAGGDLFIVQKHDATRLHWDLRLEVDGVLKS
WAVTKGPSPDPDIKRLAVRTEDHPVSYAEFEGTIPKGEYGGGTVMLWDRGSWAPIEGKSA
KDLEKGHLHFILQGGRMQGEWLLIRLKKKPGEKRENWLLRKLQDEHAEEGDVLVERELTS
VLTGRSMAEIAADKKGEYPLAGKKDEAFLAQMEKASARNEAKAKQRKRRKAAPLPKFRQP
QLATLVDDVPAGNGWMHEIKFDGYRALVAAKGNDVRVFTRSGKDWTEKFGPLVGAIAALD
LPASLIDGEIVASDADGNPDFSKLQQVLKRGHGSQSKADRLAFHAFDLVELDGEDLAKLP
NIERKERLEAMLATAEPPIHVADHVIGAGEKLYEAMCAAGQEGIISKKIDAPYRHSRSKG
WVKVKCTRRQEFVIVGWKASRAKGRPFASLLMAQNEDGELVYKGNVGTGFTADELDMLAG
KLKRLERKTPPVAVDAASARQVTWVAPKLVAEIAFAEFTADGKIRHGSYLGLRSDKDADD
VKPEKAAPAPKTAANVKISSRDRVVFPDSGQTKGELADYYEAVAGIMLPFAARRPVSLVR
CPQGRAKKCFFQKHDSGAFGDAVHHVPIMEKDGGTKGYLYVEDARGILQCVQMGTIEFHG
WASRTDDVELPDRMIFDLDPDEGLDFGDVKQAARDIKARLSDIGLVSFAMLSGGKGVHVV
VPLAPGHSWDAHKDFARRFAEALSLAEPQRFTATMSKAKRKGKIFIDWLRNQRGSTAVLP
YSARARRGAPVAVPIGWNELKDMQNAKSFSINDANRLLTRAGSKTLAGWGFADQELPDH
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgccggaatgacccgctcgccatatacaattccaagcgcgatttcgcaaaaacg
cccgaaccctccggcaaggcggaaagcagtgcgggcggcgacctcttcatagtccagaag
cacgacgccacgcggctgcactgggacttgcgactggaagtggatggcgtgctgaaaagc
tgggcggtcaccaaggggccctctcccgatccggacatcaagcgcctggccgtgcggacg
gaagaccacccggtgtcctacgccgaattcgaagggaccatcccgaagggcgagtacggc
ggcggcacggtaatgctgtgggaccgtggcagctgggccccaatcgagggcaagagcgcg
aaagacctggagaagggccacctccatttcatcctgcagggcgggcgaatgcagggcgag
tggttgttgataaggctgaagaaaaagccgggagaaaagcgggagaactggctcctgcgc
aaattgcaggacgagcatgccgaagaaggcgacgtgctggtggagcgcgagctgacgagc
gtgctgaccggccgctccatggcggaaatcgccgcggacaagaaaggcgaatacccgctg
gccggcaagaaggacgaggcttttctggcgcaaatggagaaggcctccgcccgcaacgag
gccaaggccaagcagagaaaacgtcgcaaggcagcgcccctgccgaagtttcgccaaccg
cagctcgcgaccctggtcgacgacgtgcccgccggaaacggctggatgcacgagatcaag
ttcgatggataccgcgctcttgtcgctgcgaagggcaatgacgtgcgtgtctttacccgc
agcgggaaggactggacggagaagttcggcccgctggtaggagcgattgccgcgctggac
ttgcccgccagcctgatcgacggcgagatcgtggcgagcgatgccgatggcaatcccgat
ttctccaagctgcagcaggtcctgaagcgtggccacggcagccagtccaaggccgaccgg
ctggccttccacgccttcgacctggtcgagctggatggcgaggatctcgccaagctgccc
aatatcgagcgcaaggagcggcttgaggcaatgctcgccacggccgaaccgccgatccac
gtcgccgaccatgtgatcggcgcgggcgagaagctgtacgaggcgatgtgcgccgccggg
caggaaggcatcatttccaagaaaatcgacgcgccctatcgccattcgcgaagcaagggc
tgggtaaaggtcaaatgcacccggcggcaagaattcgtgatcgtcggctggaaggcgtcc
cgcgccaagggccgcccattcgcatcgctgctgatggcgcagaacgaagacggcgagctg
gtctacaagggcaacgtcggcacgggcttcacggccgacgagctggacatgctggccgga
aaactcaaacggctggagcgcaagacgccgccggtggcggtggacgcagccagcgcacgg
caagtgacatgggtggcgccgaagctggtagccgaaatcgcgttcgccgaattcaccgcg
gacggcaagatccggcacggcagttatctgggcctgcggtcggacaaagacgcggacgat
gtgaagccggaaaaggcggcccccgcccctaaaacggcagctaacgtcaagatctccagc
cgcgaccgcgtggtattccccgatagcgggcagaccaagggcgaacttgcggactattac
gaggccgtcgcgggtatcatgctgcccttcgccgcgcgccgtcccgtcagcctcgtgcgc
tgtccacagggacgggccaagaaatgcttcttccagaaacacgatagcggcgcgttcggc
gacgcggtgcaccacgtgccgatcatggagaaggacggcgggacgaagggttacctctat
gtcgaggatgcgcgcggcatcctgcaatgcgtgcagatgggcacgatcgaattccacggc
tgggcctcgcgcaccgacgatgtggaattgccggaccggatgatcttcgacctcgacccg
gacgaggggctggacttcggcgacgtgaagcaggcggcacgcgatataaaggcgcggctt
tccgatatcggcctcgtcagctttgcgatgctttcgggcgggaagggcgtgcatgtcgtg
gtaccattggcgcccggccattcatgggacgcgcacaaggacttcgctcgccgttttgcc
gaggcgctgtcgctggcagagccgcagcgcttcaccgccacgatgagcaaggccaagcgc
aaaggaaagatcttcatcgactggctgcgcaaccagcgcggcagcaccgcggttctacct
tactccgcacgcgcccgtcgcggcgcacccgtggcggtgccaataggctggaacgaattg
aaggatatgcagaacgccaagtcctttagcattaacgacgccaatcgccttctcacacga
gcgggcagcaagacgctggctggatggggctttgcggatcaagagctgccggatcactga
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