Escherichia coli O44 H18 042 (EAEC): EC042_2620
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Entry
EC042_2620 CDS
T02067
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
elo
Escherichia coli O44:H18 042 (EAEC)
Pathway
elo03030
DNA replication
elo03410
Base excision repair
elo03420
Nucleotide excision repair
elo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
elo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EC042_2620 (ligA)
03410 Base excision repair
EC042_2620 (ligA)
03420 Nucleotide excision repair
EC042_2620 (ligA)
03430 Mismatch repair
EC042_2620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
elo03032
]
EC042_2620 (ligA)
03400 DNA repair and recombination proteins [BR:
elo03400
]
EC042_2620 (ligA)
Enzymes [BR:
elo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EC042_2620 (ligA)
DNA replication proteins [BR:
elo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EC042_2620 (ligA)
DNA repair and recombination proteins [BR:
elo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EC042_2620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EC042_2620 (ligA)
MMR (mismatch excision repair)
DNA ligase
EC042_2620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EC042_2620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
RNA_ligase
DZR_2
Prok-E2_C
PUA_2
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
CBG35453
UniProt:
D3H262
LinkDB
All DBs
Position
complement(2779173..2781188)
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDVEYDRLMRELRELETKHPELITPDSPTQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLLQFKQWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQERL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALEA
ASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPIVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMLRLLGS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaacgacgcttcgccatcatgaatat
ctttatcatgtgatggatgcgccggaaattcccgacgttgaatacgacaggctgatgcgc
gaactgcgtgagctggaaaccaaacatccagaactgattacgcctgattcgcctacccaa
cgtgtaggtgctgcgccgctggcggctttcagccagatccgccatgaagtgccaatgctg
tcgctggataacgtttttgatgaagaaagctttcttgctttcaacaaacgtgtgcaggac
cgtctgaaaagcaacgagaaagtcacctggtgctgtgagctgaagctggatggccttgcc
gtcagtattctgtatgaaaatggcgttttagtcagtgccgcgactcgtggcgatggcacc
accggggaagatatcacgtctaatgtgcgtactattcgcgccattccgctgaagctacac
ggagagaatatcccggcgcgtctggaagtacgtggtgaagtgttcctgccacaggcgggc
ttcgaaaagattaacgaagatgcgcgacgtacgggcgggaaagtgtttgctaacccacgt
aatgcggcagctggttcactgcgtcagcttgatccgcgtattacagcgaagcgaccgctc
acttttttctgctatggcgtcggtgttctggaaggtggcgagctgccggatactcatctt
ggccgtttactgcaatttaaacagtggggtttgccggtcagcgaccgggtaacgctttgt
gaatcggcggaagaagtgctggcgttctaccacaaagtagaagaagaccgcccgacgctg
ggttttgatatcgacggcgtggtgattaaggtcaactcactggcacagcaggagcggctt
ggctttgtcgcgcgtgccccgcgctgggcggtagcgtttaaattcccggcgcaggaacag
atgacctttgtgcgtgacgtcgagtttcaggttgggcgtactggcgcgattacgcctgtt
gcgcgtctggaacctgtccatgttgctggcgtgctggtgagtaacgcaaccttacacaat
gcggatgaaatcgaacgtcttggtttacgcattggcgataaagtggtgattcgccgcgct
ggcgacgtgatcccgcaggtggttaacgtcgtgctttctgaacgcccggaagatacccgt
gaggttgtattcccgacgcattgtccggtatgtggttctgacgttgagcgtgtggaaggt
gaagcggttgcccgctgtaccggtggcctgatttgcggtgcgcagcgtaaagagtcgctg
aaacactttgtttcccgccgtgcgatggacgttgacggtatgggcgacaaaatcatcgat
cagctggttgaaaaagaatatgtccatactccggcggatctgttcaaactcaccgcaggc
aaactgaccggactggagcgcatggggccgaaatcggcacaaaacgtggttaacgcgctg
gaaaaagcgaaagaaaccacctttgcccgcttcctctatgcacttggcatccgtgaagtc
ggcgaggccaccgcagcaggtctggcggcatatttcggcacgctggaagcgctggaagcc
gcttcgattgaagagctgcaaaaggtgcctgatgttggcattgtcgttgcatcccacgtt
cacaacttctttgccgaagaaagcaaccgcaatgtcatcagcgagctgttggcggaaggt
gttcactggcctgcgccgatcgttatcaacgcggaagagattgacagcccgtttgctggt
aaaaccgtggtgcttacgggcagcttaagccagatgtcgcgtgatgacgctaaagctcga
ctggtcgaactgggcgcgaaagtcgcgggcagcgtgtcgaagaaaaccgatctggtgata
gcgggtgaagctgcaggatctaaactggcgaaggcgcaggaactgggcattgaagtcatc
gacgaagcggaaatgctgcgtttgctgggtagctga
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integrated database retrieval system
