Erythrobacter litoralis DSM 8509: Ga0102493_112466
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Entry
Ga0102493_112466 CDS
T04740
Name
(GenBank) Mfd transcription-repair coupling factor, superfamily II helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
elq
Erythrobacter litoralis DSM 8509
Pathway
elq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
elq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Ga0102493_112466
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
elq03400
]
Ga0102493_112466
Enzymes [BR:
elq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Ga0102493_112466
DNA repair and recombination proteins [BR:
elq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Ga0102493_112466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
SecA_DEAD
AAA_16
UB2H
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AOL23479
UniProt:
A0A074N2F4
LinkDB
All DBs
Position
complement(1582061..1585555)
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AA seq
1164 aa
AA seq
DB search
MPDLSRILAADAPLTLSSLPRGSLSLVMSDLARAAKRRAVFIAPDDAAMRAIADAARFFA
PEVEVIEFPAWDCLPYDRASPALSISAARLSALHSLQNPQGGSQLLVTTVNAALQRVLTP
FRIRESVREFAPGTTIGHDSLASLLTRAGYSRTDTVVDHGEFAVRGSIVDIFPSSLDQGL
RLDFFGDELESLRLFDPNTQRSTGTLKSHLLLPASEALIDDASIKRFRSRYRELFGASAT
QDPLYEAVSEGRRLAGMEHWLPLFEERLSTLFDHLDASDVMVIDQQAIGASEERLADIGD
YHDQRMRTGSDRSGSYRPLAPEALYLGEDEFTKALAAGPAHRATIFAAPEGEASVDFGFR
AARDFAPERARGDNVYEAAAQHLKAVARSGRRPLLAAYSTGSARRIGSILEEAGTPTRMA
ESWQEALGLAAKGDATVMVLPLEAGFANDDLEILTEQDVLGDRLVRRKKKRRDSDAFLAE
LQALSRGDLVVHVEHGIGKYLGLEPIAVGKSQHDCVALEYHGGDKLFIPVENIDVLSRYG
SSEEAVPLDRLGGEAWQKRRARLKERITAIAGELMKVAAERALKKAPIFEADEASFNQFV
DRFPWEETDDQERAIEDVLRDLESGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGQQVAV
VAPTTLLARQHYQNFASRFEGFPLKVGRLSRLVPAKEIAETREGLANGDVDIVVGTHAIL
SKSTDFKNLGLVIVDEEQRFGVSHKEKLKQLRADVHMLTLTATPIPRTLQMAMTGLRELS
TIQTPPVDRLAVRTYVMEWDHMVMREALLREHHRGGQSFIVVPRISDMAPLEEWLHENVP
EVKIVSAHGQMGAGEIEERMSAFYEGKYEVLLSTTIVESGLDLPSANTIIIHRADRFGLA
QLYQLRGRVGRAKLRAYAYLTYEKVVALSEVAEKRLKVLSDLDSLGAGFQLASHDLDIRG
AGNLLGDEQSGHIREVGFELYQSMLEDAILAAKAGEMGLEKPRDAVSPQITVDAPIMIPE
DYVPDLAVRMALYRRLNQAEGKAEIESLAAEMIDRFGELPSPTQNLVRLIEIKHQAIAAN
IAKIDVGARGTLVTFHKDDFPDPAGLVAYVDRLQGTAKLRPDMKLVINRAWGDPQSRLNG
LFQLTKGLSGIVKKAAKVKAREAA
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatctctcccgtatcctcgcagcggacgcgccgctgacgctgagctcgctgccc
cgcgggagcctgtcgcttgtcatgagcgatctcgcccgcgcggcgaaaaggcgagcggtc
ttcatcgctcctgacgatgccgcgatgcgcgcgatagcggatgcggcgcgcttcttcgcg
cccgaagtggaggtgatcgagtttcccgcctgggactgcctgccctatgaccgcgcaagc
ccggccctgtcgatcagcgcggcgcgattgtcggcgctccacagcctgcagaacccgcaa
ggcggttcgcaattgctggtcactaccgtcaacgccgcgctccagcgcgtcctcaccccg
ttccggatccgcgaaagcgtgcgcgaattcgcacccggcacgacgatcgggcacgacagc
ctcgcctcccttctgacgcgggcgggatattcacgcacggacaccgtcgtcgatcacggc
gaattcgctgtgcgcgggtcgatcgtcgatatctttccctcctcgctcgatcagggattg
aggctcgacttcttcggtgacgaactcgaatccctgcgcctgttcgatccgaacacgcag
cgttcgacagggactctgaaatcccatcttctgctgcccgcttccgaagctctgatcgac
gatgcgagcatcaagcgcttccgctcgcgctatcgcgagctgttcggggcttcggcaacg
caggacccgctctacgaggcggtcagcgaggggcgccggctcgcggggatggagcactgg
ctgccgctgttcgaagagcggctttcgaccctgttcgaccatctcgatgccagcgacgtc
atggtcatcgaccagcaagccatcggcgcgagcgaggaacggcttgccgatatcggcgac
taccacgatcagcgcatgcggaccggatcggacagatcgggcagctatcggccgctcgca
ccggaagcgctctatctcggcgaggatgaattcaccaaggcgctggcagcgggaccggct
caccgagcgactatcttcgctgcgcccgaaggcgaggcttcggtggatttcggcttcagg
gccgcccgcgatttcgctcccgagcgcgcgcgcggcgacaatgtctacgaggccgcagcc
caacatctcaaggccgtggccaggtccggcaggcgccctctcctcgccgcatattcgacc
ggcagcgcgcggcgcatcggctcgatactcgaggaagcgggcacgcccacccgcatggcg
gaaagctggcaggaagcgctcggccttgccgcgaagggcgatgcaacggtcatggtcctg
cccctggaagcgggcttcgccaacgacgacctcgaaattctcaccgagcaggacgtgctc
ggcgaccggttggttcggcgcaagaagaaacggcgcgattccgatgcgttcctcgccgaa
cttcaggcgctttcgcggggcgatctcgtagttcatgtggagcacggaatcggtaagtat
ctcggcctcgaaccgatcgcggtgggcaagagtcagcacgattgtgtcgctctggaatat
cacggcggcgacaagctcttcattccggtcgagaacatcgacgttctttcgcgctatggc
tcttcggaggaggccgtccctctggaccggctcggcggcgaggcatggcagaagcggcgc
gcgcggctcaaggaacgcatcaccgcgatcgcgggcgaactgatgaaggtcgccgccgaa
cgcgcgctcaagaaggcaccgattttcgaggcggacgaggcaagtttcaaccagttcgtc
gaccgcttcccatgggaggaaaccgacgaccaggagcgcgcgatcgaggacgtgctgcgc
gacctcgaaagcggcaagccgatggaccgcctagtgtgcggcgatgtgggcttcggcaag
accgaggtcgccctgcgcgctgccttcgtcgcggcaatgagcgggcagcaggtcgcggtg
gtcgcccccacgaccctgctggcgcgccagcattatcagaacttcgcgagccggttcgaa
ggtttcccgctcaaggtcgggcgcctgtcgcgacttgtcccggccaaggaaatcgccgag
acccgcgaagggcttgccaacggcgatgtcgacatagtggtcgggacccatgcgatcctt
tcgaaatcgacggacttcaagaacctcggcctcgtcatcgtcgacgaggaacagcgcttt
ggcgtgagccacaaggaaaaactcaagcaattgcgggcggatgtgcacatgctcacgctg
accgcaacgccgatcccgcgcacgctgcagatggcgatgacgggtctgcgcgagctttcg
actatccagaccccgccggtcgaccgcctcgcagtgcgcacttacgtgatggaatgggac
cacatggtgatgcgcgaggccttgctgcgcgaacaccatcgcggtggccagagtttcatc
gtcgttccccgtatctcggacatggccccgctcgaggagtggcttcacgagaacgtgccc
gaggtgaagatcgtctctgcccatggccagatgggtgcgggcgagatcgaggaacgcatg
agcgcgttctacgagggcaaatacgaggtgttgctttcgaccacgatcgtcgaatccggc
ctggacctgccttcggccaatacgatcatcattcaccgtgccgatcgcttcggcctcgct
cagctctatcagctgcgcgggcgtgtgggccgggcaaagctgcgggcctatgcctatctc
acctacgagaaggtcgtggcgttgtccgaagtcgcggaaaagcgtctcaaggtgctcagt
gacctcgacagcctcggcgcaggtttccagctcgccagccatgacctcgacattcgcggg
gctggcaacctgcttggcgacgagcagtcgggccatatccgcgaagtcggtttcgaactc
taccagtcgatgctggaggatgcgatcctcgcggcgaaggctggcgagatggggctggag
aagccccgcgatgccgtctcgccgcagatcacggtcgatgcaccgatcatgatcccggag
gattacgtccccgatcttgccgtccgcatggcgctctatcgccgattgaaccaggccgag
ggcaaggccgagatcgaaagtctcgccgcggaaatgatcgaccgtttcggcgagcttcct
tccccgacccagaatctcgtgcgcctgatcgaaatcaagcaccaggcgatcgccgccaat
attgccaagatcgatgtcggcgcgcgcggcacgctcgtcaccttccacaaggacgatttc
cccgatccggctggcctcgtcgcctatgtcgatcggctccaggggacggccaagctgcgg
cccgacatgaagctcgtcatcaaccgcgcgtggggcgacccgcaaagccgtctcaatggc
ctgttccagctgacgaaggggctgagcgggatcgtcaagaaggcggccaaggtaaaagcg
cgcgaggcggcctag
DBGET
integrated database retrieval system
