Esox lucius (northern pike): 105007837
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Entry
105007837 CDS
T04894
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
els
Esox lucius (northern pike)
Pathway
els04510
Focal adhesion
els04512
ECM-receptor interaction
els04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
els00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105007837
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105007837
09142 Cell motility
04820 Cytoskeleton in muscle cells
105007837
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
els04147
]
105007837
00536 Glycosaminoglycan binding proteins [BR:
els00536
]
105007837
Exosome [BR:
els04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
105007837
Glycosaminoglycan binding proteins [BR:
els00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105007837
Hyaluronan
Extracellular matrix or blood plasma proteins
105007837
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
VWA_3
Motif
Other DBs
NCBI-GeneID:
105007837
NCBI-ProteinID:
XP_012987688
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All DBs
Position
LG03:complement(1075247..1106745)
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AA seq
1013 aa
AA seq
DB search
MMMRAEVITLCFLFGVATYAQSVPECNKKHDCPINVYFTIDTSETIALQEPPPGSLVESI
KMFTERFAERLEDVEYKGVVHIRWQFGGLHFSQTQKVFSSFQAKQDFIKGVRGIRYLGKG
TYIDCALANMTQEVIRSASDPKALRFAVIITDGHVTGNPCGGVKVMAERARDEGIKMFVV
AATKNVDETGLREIANSPATVYRNDFLAVDLTGSKAVIQEDTIDRIIQAMTHMAYQECYE
VKCLETVGPPGPKGHRGQKGAKGDNGDPGPKGERGRQGDPGIEGPIGQPGVKGEIGLKGE
KGEIGAEGKKGVAGLAGRNGTDGQKGKIGRIGAPGCKGDPGDRGPDGHPGDVGDGGLPGI
NGEKGDPGRQGRSGPVGPVGDSGPKGERGSSGAPGSPGVKGKPGTSGGPGVKGELGRRGD
FGPKGAQGPDGVKGDKGEAGPEGVRGFSGETGTKGTKGDNGLPGPRGPPGSPGEAGKNGT
RGDPGDSGPRGDPGLQGPKGDVGRAGFSYPGPRGPTGDRGEKGSPGPRGSRGDCGSKGAP
GTKGPLGEEGEPGPHGEPGFRGPRGGPGRDGDPGPEGDPGLTECDVMTYIRETCGCCDCE
KRCGALDIVFVIDSSESVGLTNFTLEKNFVINTMNRLGSMANDPNSETGTRVGVVQYSHS
GTFQAIRLNDSKIDSLSAFKDAVKRLEWIAGGTWTPSALKYAYDHLIRDSRRANANVTVV
VITDGRFDPRDDDSLLTYLCSDPSVDVSAIGIGDMFDQIEENESLKSIACQRDGRVLGMR
RFADLVAEEFIDKIETVLCPDPIIVCPDLPCKSEPAVASCVQRPVDMVFLLDGSERMGVE
NHRRAKEFIENVARHLTLASSQSDDKNARVALLQYGSPTEQRVEFSLTHNLTVIADSLAV
MDYMDSSSSLGSAIIHAVNNLVMSQGSRLARRNAELSFVFITDGVTASDNLEEGVSAMRR
AEGVPTVIAMGTDTDQEVLRKVALGDTSAIFRGDDFSTLENPSFFERFIRWVC
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgagggcagaggtcatcacactgtgcttcctgttcggagtggcaacatatgcc
cagtcagtcccagaatgcaacaagaaacatgattgtcccattaacgtgtactttacaatc
gacacatctgagaccatcgccctgcaggagccaccccctggctccctggtggagagcatc
aagatgtttacagagcgttttgcagagcgcctggaggatgtggagtataagggcgtggtc
cacatcagatggcagttcggtggacttcacttctctcagacacaaaaggtcttcagctcc
ttccaagccaagcaagatttcataaagggggtcagagggatccgctacctggggaaggga
acctacatcgactgcgccctcgccaacatgacacaggaagttatacgttcagcctctgac
cccaaagcactgcgattcgctgtcatcatcactgacggtcacgtgactggaaacccgtgt
ggtggagtgaaggttatggctgagcgggcgcgtgatgagggcatcaaaatgtttgtggtc
gcagcaacgaagaacgtggatgagactggtcttcgggagatcgctaactcaccagccact
gtctacaggaatgacttcctggccgtggatctcaccggaagcaaggccgttatacaggaa
gacaccattgaccgcattatccaggccatgacccacatggcatatcaggagtgctatgaa
gtgaagtgtctggagacagttggacctcctgggccaaaaggacacagaggacagaaggga
gctaaaggagacaatggtgatcccggtcccaaaggggagagaggcagacagggtgacccc
ggcatcgagggtcctattggtcaaccaggagtcaagggtgaaattggtctaaagggtgaa
aagggggagattggagctgagggtaagaaaggagttgccggccttgctggacgcaacggg
acagatgggcagaaaggcaagattggacgcattggcgcccctggctgcaaaggagaccca
ggcgacaggggccctgatggtcacccaggagacgtgggtgatggtggacttcctggaata
aatggggagaagggagatcccggtcgtcaaggaagatcaggacctgttggcccagtggga
gactctggacctaagggtgaaagagggagttctggagcacctggttcacctggagtcaaa
ggaaagccaggaacgtctggaggcccaggagtcaaaggagaactggggaggagaggagac
tttgggccaaagggagctcagggtcctgatggagttaaaggggacaagggtgaagcgggt
cctgagggcgtcagaggattttcgggtgaaacaggaaccaaaggaaccaagggggacaat
gggctgcctggcccccgaggcccccccgggtcgccaggagaggccgggaagaacggtacc
cgtggcgaccctggtgattctggacctagaggagatcccggccttcaaggaccaaagggc
gatgtgggaagagctggcttcagttacccaggacctagaggaccaacaggggaccgtggg
gagaagggcagtcctggtccaagggggtccagaggtgactgtggctctaaaggagcacca
ggaaccaaggggccccttggagaagagggggaaccagggcctcacggggagccaggtttc
agaggaccgagaggagggcctggacgagacggagatccaggtcccgagggagatcccggc
ctaacagaatgtgatgtcatgacctacatcagagaaacctgcggttgctgtgactgtgag
aagcgttgtggggcgctggacatcgtgtttgtgattgacagctcagagtctgtgggcctg
actaacttcaccctggagaagaactttgtgatcaacaccatgaaccgactgggatccatg
gcaaacgaccccaactccgagacaggtaccagggtgggtgtggtccagtacagccacagc
ggaaccttccaggccatccgactcaacgactccaagattgactccctgtccgccttcaag
gacgcagtgaagcgtctggaatggatagcgggtgggacctggaccccatctgctctgaag
tacgcctacgaccacctgatcagggacagccgccgggccaatgccaacgtcacagtggtg
gtgatcacagacggacgctttgaccccagagacgacgactcacttctcacttacctctgc
agtgaccccagtgtagatgtgagtgcgattggtattggtgacatgtttgaccagattgag
gaaaatgagagcttgaagagtatagcatgtcagagagatggacgagtcctggggatgaga
cgcttcgctgatctggtggctgaagagttcatcgacaagatagagactgtgctctgccca
gatcccatcatcgtgtgtccagacctaccctgtaagagtgagccggcggtagctagctgc
gtccagcgcccagtggacatggtgttcctgctggacgggtcagagagaatgggagtggag
aaccaccgcagggctaaggagttcattgagaatgtggcccgccacctcacactggccagc
agccaatcagatgacaagaacgcccgcgtggccctgctgcagtacggcagccccacggaa
cagagggtggagttctcccttacccacaacctgacagtgatcgctgattcactggctgtg
atggattacatggactcctcctcctccttgggcagtgccatcatacatgctgtcaacaac
ttggtgatgtcacagggcagtcgtctggcccgtcgtaatgcggagctgtcatttgtcttc
atcaccgatggcgtcactgccagcgacaaccttgaggagggtgtctcagctatgcgacgg
gctgaaggtgttcccacagtgatcgccatggggaccgatacagaccaggaagttctgagg
aaggttgccctaggagacacgtcggccatctttagaggggacgacttcagcacgctggag
aatccttccttcttcgaacgcttcatccgttgggtctgctaa
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