Esox lucius (northern pike): 105016513
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Entry
105016513 CDS
T04894
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
els
Esox lucius (northern pike)
Pathway
els04510
Focal adhesion
els04512
ECM-receptor interaction
els04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
els00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
105016513 (col4a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
105016513 (col4a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
105016513 (col4a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
els04147
]
105016513 (col4a2)
00536 Glycosaminoglycan binding proteins [BR:
els00536
]
105016513 (col4a2)
Exosome [BR:
els04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
105016513 (col4a2)
Glycosaminoglycan binding proteins [BR:
els00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
105016513 (col4a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
105016513
NCBI-ProteinID:
XP_012993253
LinkDB
All DBs
Position
LG16:complement(6989399..7055276)
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AA seq
1683 aa
AA seq
DB search
MKFEVRMCGAMRTTGLTELKSLRFLLCLSVALLASGVDAGDKKHSVPCGGRDCSGGCQCF
PEKGARGQPGPLGPLGPQGPPGRLGEQGLQGPQGEKGDRGRGGIIGLKGSVGMTGVPGFS
GSDGIPGHPGQAGPRGKPGADGCNGTHGDPGSPGTPGYDGPPGYNGQPGRKGQKGDTLDV
KVFMERFRGDRGQPGNSGLIGPQGHPGQIGFRGLPGPQGPKGFPGPPGPKGTMTTVLKGV
KGEPGEAGEPGPPGNSTHSHTGPINGPQGEKGEKGLKGETGSLADNRGETGIMGMPGQRG
LPGQNGEQGLRGDLGEPGLRGIDGQKGARGEEGELIYEGSSEGQDTVGPPGLPGQLGPQG
ERGLQGEKGLPGPAGRPAFDDQQQVIQLWGELGDRGVRGETGPPGEPGNPALSPGPKGVK
GQTGLLGPSGPKGSWKNFYRGLPGSSGRPGSAGRKGLKGDHGLCACEIVHSPSGLPGPAG
DRGIPGMSGEQGQPGQLGEPGPQGVTGLPGFPGTKGQTGPKGRKGEITQATRRGSPGDRG
DPGSSGDPGLQGFPGPSGIHGLPGNRGPPGDAPAHLAGEKGYPGRHGMPGLLGEIGESGR
VLGAPKGVKGLPGDDGETGYPGVEGRAGDPGESGCFPSGDEGQNYITGACDSIPGQSGIP
GPPGPKGLDGFLGLSGQKGSTGPGGDEGAKGETGEPGRGGQPGPPGFPGPRGDYGQQGSK
GQPGNPGVPGRQGGDGELGKKGPHGEIWGASTGQPGEVGLPGDQGAKGIIGDPGVEGYTG
MAGMPGMIGSKGPMGPSGLQGEQGRPGTPGKKGWPGVPGPPGVPGPTGETGLPGLRGGRG
DQGDPGSPGPVGLKGTPGEFGDVGPDGKTGDPGDPGHPGPTGFSGISGVKGFKGSQGMPG
FEGMAGEPGPKGFSGQKGETGISGGFGPKGNMGNYGPKGDRGLTGPPGEKPDIPRQIISD
MKGVKGEEGETGQSGFTGPRGPKGFPGIPGMEGYHGIPGEPSDAKGFPGNPGAQGLPGPK
GMPGPSGSKGISGFPGMPGPRGDKGSPGAYGSTGESGLKGVKGEGGPIINMPGATGLRGE
DGFPGLPGPKGLTGTPGDRGSEGFHGIDGMKGVTGEPGTEGPVGSDGLVGFPGNQGTKGW
PGIPGTTGTSGNPGFRGEIGFPGLKGIFGLDGLKGHKGIPGLPGQDHWGAPGDPGAKGPK
GEQGIPNSETGFPGSVGLKGVQGQQGDEGLMGPPGFQGPQGPQGTSDIPGPPGDPGYPGI
KGLSGFPGPRGSAGKHSQYGEKGVVGQSGFPGLPGLKGNQGEQGPPGIRGESGVSGKKGV
KGEQGMMGFPGKPGFQGDRGPSGLKGNIGPTGYPGLPGSQGPAPPPSRIPGERGANGPQG
IIGPEGVRGETGPKGQPGAPGYQGPKGQKGMPGVGGRPGTPGYRGNTGERGHLGLQGTEG
LHGNPGTRGLPGMPGRSVSVGYLLVKHSQSEQSPMCPVGMAQLWEGYSLLYLEGQEKAHN
QDLGLAGSCLPRFNTMPFMYCNPGDVCYYASRNDKSFWLSTTAPLPMMPVEEEDIRPYIS
RCSVCEAPSVAIAVHSQDITIPQCPAGWRSMWIGYSFLMHTAAGDEGGGQSLSSPGSCLE
DFRTTPFIECNGAKGTCHYFANKHSFWLTTIERSFQESPVAETLKAGQLLSRISRCQVCM
KNL
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttgaagttcgaatgtgcggggcaatgcggacaacaggcctaacagaactcaag
agcctcaggtttcttctatgtctttcggtggccctcctagcatcaggagttgacgcaggc
gataagaagcacagtgttccatgtggcggaagagactgcagtggaggttgtcagtgcttt
cctgagaaaggggccaggggccagccaggtcctcttggccctcttggcccccaagggcct
ccaggaaggcttggggaacagggacttcagggaccccagggagagaagggtgaccggggc
agaggaggcatcattggtctcaagggttctgtggggatgacgggtgttcctggcttttct
ggatcagacggtatccctggccacccgggacaggcagggcctcgtggcaaaccgggagca
gatgggtgtaacggaacacacggtgacccagggtcgccagggacaccaggctatgatggc
ccgcccgggtataacggccaaccgggtaggaaggggcaaaagggcgacaccctggacgtg
aaagtgttcatggagcgcttcaggggagatcgaggacagcctgggaattctggattaata
gggcctcaaggtcatccaggtcagatcggtttcagaggactgccaggaccccagggccca
aaagggtttcctggccctcctggaccaaagggcaccatgaccacagtgttgaagggagtc
aaaggagagccgggtgaagctggagagcctggccccccagggaactccacccattcccat
accggaccgataaacggaccccagggtgaaaagggtgagaaagggttgaaaggtgaaact
ggatccctggctgacaacagaggagagactggcattatgggaatgccggggcaacggggt
ttgccgggtcagaatggagagcaaggactcaggggagaccttggagaaccaggactgagg
ggcatagatggacagaagggtgccagaggagaagaaggagagctgatatatgagggttcc
tctgaagggcaggacacagttggtcccccgggtcttcctggccagctgggtccccagggt
gaaaggggtcttcagggggagaaaggtctgcccggacctgcaggacgtccagcctttgat
gaccaacaacaagtcatacaactctggggtgaattaggggaccgtggggtgaggggagag
acgggcccacctggagagccaggtaaccccgccctcagccccggacctaaaggagtcaaa
ggccagactgggttattggggccatccggaccgaaagggtcatggaagaacttctacagg
ggattgccagggtcgagtggtcgtccaggatccgctgggaggaaagggctgaaaggcgat
cacggactgtgcgcgtgcgaaattgtccactccccatcgggtcttcctggtccagcaggt
gacaggggcatacctggaatgagtggcgagcaaggtcagccgggccaattaggagagccc
ggtccccaaggtgtcactggactgcctgggtttcctggtaccaaaggacaaacaggacct
aagggcaggaaaggcgagataactcaagccaccaggagaggatctcccggggaccggggg
gacccagggtcgtcaggtgacccaggattgcagggattcccagggcccagtggaatccat
ggactccccgggaaccgcggacctccaggggacgcaccagcacatctcgccggtgaaaag
ggttatccgggccggcacggaatgcctgggttgttgggagagattggagaatcaggacgt
gttctaggggcccctaaaggggtcaaaggattgccaggggatgatggggaaacgggatat
cctggcgtggaaggtcgagctggagatccaggagagtctggctgcttcccgagtggagat
gaaggacaaaattacatcacaggtgcttgtgattccatacccggacaatctggaatacca
ggacctcctggacccaaaggcttagatggtttcctaggtctctcgggtcagaaaggatct
acaggcccaggtggagatgagggtgccaaaggagagacaggagagccaggcaggggagga
caaccaggacccccgggattccccggtccccgtggggactatggtcagcagggctccaag
ggtcaacctgggaacccgggtgtgccagggcggcagggtggagacggagagctcgggaag
aagggaccacatggagagatatggggagcatccaccggacaacctggagaagtaggactt
cctggagatcagggagctaaagggattatcggagatccaggagtggagggctacacaggg
atggctggcatgcctgggatgattggttccaagggaccaatgggcccttcaggtctgcaa
ggggaacagggaagaccgggaacccccgggaagaagggctggccgggtgtacctggcccc
cctggggttcctggaccaacaggagaaacaggactaccaggtttgagaggaggcaggggt
gatcagggggaccctggctctccgggccccgtaggattgaaggggacacctggcgagttt
ggagatgtgggccctgatggaaaaactggagacccaggggatcctggacacccaggacct
acagggttctctggcatttcaggggttaagggtttcaaaggttctcaaggaatgccaggg
tttgaaggaatggctggagaacccggcccgaagggcttctccggtcagaaaggagaaact
ggcatttcaggcggattcggacccaaaggaaatatgggcaactatggtccaaagggtgac
cgtggtctgaccgggccccccggggagaagcccgacatccctcgtcagatcatcagtgac
atgaagggggtcaaaggagaagaaggagagacaggacaaagcggattcaccggacccaga
ggtcctaaaggttttccaggcattccaggtatggagggctaccacgggattcctggagaa
cccagcgatgcaaagggtttcccaggcaacccaggggcacagggacttccggggccaaaa
ggaatgccgggtccatccggatcaaaaggaatcagcggttttcctgggatgcctggtccg
aggggcgacaaaggttctccgggtgcatacggatctacaggagaatcaggactgaagggt
gtcaaaggtgaaggaggtcctattatcaacatgcccggggccacaggactgcgaggagag
gatggcttccctggccttccaggtccaaagggcctcactgggacgccgggagacaggggc
agtgagggtttccatggtattgacggtatgaagggggtgacgggtgagccaggcacagaa
ggacctgtcggatctgatggtttagttgggtttcctggaaaccagggtacgaagggttgg
cctgggatccccgggacaacgggcacgagtggaaatccaggtttccgaggagagataggt
tttcctggacttaagggaatattcggactggatgggttgaagggtcacaaaggaatccct
ggactcccaggtcaggatcactggggagctccaggtgaccctggagctaagggaccaaag
ggagagcagggtatacccaactcagagacggggttcccgggatcagtgggtttgaaggga
gttcaaggacaacaaggtgacgagggcctgatgggacctcctgggtttcagggcccccaa
ggaccacagggcacctcagacatccctggaccaccgggagaccctggctaccctgggatc
aaaggactgtcaggtttccctggaccacgtggttctgctggcaaacactctcagtacggt
gagaaaggtgtagttggccagtctggtttccctggtctccctggtctgaaaggaaatcag
ggtgaacagggacccccaggaatcaggggagagagtggagtgtccgggaagaaaggtgtt
aagggagagcaaggaatgatgggatttcctggaaagcctggtttccaaggagaccgaggt
ccttccgggctaaaaggaaatattggacccacaggttatccgggactccctggcagccag
ggcccggccccaccgccctccaggatcccaggagagaggggcgctaatgggcctcagggc
atcataggaccagaaggggtacgaggggagactgggccaaaaggacagcctggagctcca
ggctaccagggtcccaaggggcagaagggaatgcctggggtgggtggcagaccaggtacc
cccgggtaccgtggcaacactggagagaggggccaccttggactgcagggcacggaaggt
ctccatggtaaccctggcaccagggggttgccaggcatgcctgggcggagcgtgagtgtg
ggctacctgctggtcaagcacagccagtccgagcagtcgcccatgtgtcctgtgggaatg
gcccagctttgggaaggctacagcttgttgtacctcgaaggccaggagaaggcccacaac
caggacttaggtctggctggctcgtgcctccctcgtttcaacaccatgcccttcatgtac
tgcaaccctggggacgtctgttactatgccagccgcaacgacaagtccttctggctgtcc
accacggcgcccctacccatgatgccagtggaggaggaggacatcaggccctacataagc
cgctgctccgtgtgtgaggcgccgtccgtggccattgccgtgcatagccaggacatcacc
atcccacaatgccctgcgggctggcggagtatgtggatcggatactccttcctcatgcac
acggctgcaggtgacgaaggcggcggccagtctctttcatcccccggctcctgtctggag
gacttccgtaccacgcccttcatcgagtgcaacggggccaagggcacatgccactacttt
gccaacaagcacagcttctggctcaccaccatagaaaggtccttccaggaaagtccggtc
gccgagaccctgaaagccggccagctcctctcacgcatcagccgctgtcaggtctgcatg
aagaacctgtga
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