Esox lucius (northern pike): 105023121
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Entry
105023121 CDS
T04894
Symbol
cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
els
Esox lucius (northern pike)
Pathway
els03015
mRNA surveillance pathway
els03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105023121 (cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
105023121 (cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105023121 (cpsf6)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
105023121 (cpsf6)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
105023121
NCBI-ProteinID:
XP_012994124
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Position
LG18:complement(4854947..4872070)
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AA seq
554 aa
AA seq
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MADGVDHIDIYADVEEEFNQESDYPVHDQIDLYDDVISPSANNGDAPEDRDYLDNLPPPA
GSEGNKVATPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAIRSIGISDVLEIKFFENRAN
GQSKGFALVCVGSDASSRKLMDLLSKRELHGQNPIVTPCNKQSLSQFEMQSRKSTSGGQM
SGEGKAGPPTMGPRGGFPMGRGRGRFPGPPGPGGDRFPGPIGPGGPPPHFPGGMQGPPRP
PPGPPGPPGPPGPPPPGQGLPPPMQGPPNRGDRPPPPVMFPGQFGQPPMGPLPPGPPPHG
FGPPPGPPPPQQGPPPPGHFPPRPPGPLGPPLALAPPPHMPGPPPGGPPPAPHVNPAFFP
PPGGPNNMGGPPGGDNRGPNGPNDPYGRPPPYDRGDFGPAGRDMESARTPLSEAEFEEIM
NRNRAISSSAISRAVSDASAADYGSAIETLVTAISLIKQSKVSADDRCKVLISSLQDCLH
GIESKSYGSASRRERSRERDHSRSREKSRRHKSRSRDRHEDYYRERSRERERHRGDRDRE
RERDRDREREYRHR
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggcgtcgatcatatcgacatctatgccgatgttgaagaggagttcaaccag
gagtcggactaccccgttcacgaccagatagacctgtacgatgatgtcatttctccgtcg
gccaacaacggagacgcacctgaggatcgggactacctggacaacctgcccccgcctgca
ggctctgaggggaacaaggtcgccacgcccaacgtggtctacacatacactggcaagcgg
atcgccctctacatcggcaatcttacatggtggacgactgatgaagatttgaccgaagcc
atccgatcaataggcattagtgacgtgcttgaaatcaagtttttcgagaaccgagcaaac
ggacagagtaaagggttcgcccttgtgtgtgtgggctcggacgcgtcctccaggaagctt
atggacctgttgtccaaacgggaattacacggacagaacccaatcgtcaccccctgcaac
aagcagtctctcagccagtttgagatgcagtctcggaaaagtacatcgggcggacagatg
tccggagaggggaaggcgggcccccccaccatgggcccccgcggcggcttccccatggga
aggggccgaggccgctttcctggcccgcccggccccggaggggaccgcttccccggaccc
atcggacctggaggtcccccgccacacttcccgggtggtatgcagggtcctcctcgcccc
cctcccggcccaccgggcccccctgggcccccaggaccccctcccccaggacagggcctc
cctcctcccatgcagggtccccccaatcgaggcgaccggcccccgccgccggtcatgttc
cccggtcagtttggccagccgcccatgggccctctgccccctggcccacccccacatggt
ttcgggccgccccccgggccccctccaccccaacagggccctccgccccctggtcatttc
ccgcctcggccccctggtcctcttgggcctccgctagcccttgcccctcctccgcacatg
ccaggccccccgccaggaggtccccctccggctccccatgtcaacccggcattcttccct
cctcccggggggcccaacaacatgggagggccccctggaggggataacagaggccccaac
ggacccaacgacccctacggacgcccgcctccatatgaccgcggggacttcggacctgcc
ggaagggacatggaatcggcgcggaccccactcagcgaggccgagtttgaggagataatg
aaccgcaaccgagccatctccagcagcgccatctccagggcggtgtcggatgctagcgca
gctgactacggcagcgccatagagactctggtgacggctatctccctgatcaagcagtcg
aaggtgtcggctgatgaccggtgcaaagtgctcatcagctctctgcaggactgcctccac
ggcattgagtccaagtcttacggctccgcgtccagacgcgagagatcgcgggagcgggac
cacagccgatcccgggaaaagagccgacgccacaagtcccgtagccgcgaccgccacgaa
gattactaccgcgaacgcagccgggagcgagagcgtcaccgcggcgaccgggacagggaa
cgcgagcgggacagggaccgcgagagggagtaccggcaccgctaa
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