Esox lucius (northern pike): 105028015
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Entry
105028015 CDS
T04894
Symbol
ncbp1
Name
(RefSeq) nuclear cap-binding protein subunit 1 isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
els
Esox lucius (northern pike)
Pathway
els03013
Nucleocytoplasmic transport
els03015
mRNA surveillance pathway
els03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
els00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105028015 (ncbp1)
09122 Translation
03013 Nucleocytoplasmic transport
105028015 (ncbp1)
03015 mRNA surveillance pathway
105028015 (ncbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
els03019
]
105028015 (ncbp1)
03041 Spliceosome [BR:
els03041
]
105028015 (ncbp1)
Messenger RNA biogenesis [BR:
els03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
105028015 (ncbp1)
Spliceosome [BR:
els03041
]
Common components
Common spliceosomal components
Cap binding complex
105028015 (ncbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G
MIF4G_like
AAA_11
Jnk-SapK_ap_N
EMC3_TMCO1
Vfa1
GBP_C
AAA_13
FapA
Afi1
tRNA_bind_2
Exonuc_VII_L
PHM7_cyt
DUF1664
Fib_alpha
Importin_rep_6
Motif
Other DBs
NCBI-GeneID:
105028015
NCBI-ProteinID:
XP_010898748
LinkDB
All DBs
Position
LG04:complement(5297367..5304945)
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AA seq
796 aa
AA seq
DB search
MSRRRHSDGDDGGQSHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANL
YTEALYLVRFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYVVLSSLPWV
GKELYEKKDVEMDRLLNQIDGYLKRRLKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHTPDCQYPVPRVVFRVFDYTDAPEG
PVMPGSHSVERFVIEENLHNIIKSHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYMRLDTMNTTCIDRLLNWFSHH
LSNFQFRWSWDDWADCLAMDADKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFSALIPAE
PIFFYKYQDEANSALPGYAVAITVGNAIKNRASNEEILTVLKDVPNPNQEDDDDEGEGFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEILKALTDCDEGKLHILRVVYEVWRNHPQM
ISVLVDKLIRTQIVDCAAVANWLFSPNMAHEFTRFYVWEILHSTIRKMNKHVQKIQKELE
EAKEKLEKQQHKKQKDSGDEEDMERNSEDEDGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMMLTEHLVRCETGSVDFNTPWYKNCIERLQQIFLMHHVTIQQYVGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaagaaggcacagtgatggagatgatggcggccagtctcacaaaagaagaaga
acgtccgagcccattgaaattgaagatcgtctggaatcacttatatgtagagtgggagaa
aagagtacttcctccctggaaagcaacctggagggacttgctggtgtcttggaagctgat
cttcccaattacaaaaacaaaatcctgcgcatcttgtgtgctgtggctcgacttctgcct
gagaagctgaccgtgtacacaacgctggtgggccttctcaatgccaggaactacaacttc
ggtggggagtttgtggaggccatgatcagacaactcaaagagacattaaaggccaacctg
tacactgaagctctatacctggtgcgcttcctctcggacctggtgaactgccatgtgatc
gccgccccctccatggtggccatgtttgagaactttgttagtgtcactcaggaagaggat
gtgccgcaggtgcgctccgactggtttgtgtatgttgtgctttccagtctcccctgggtt
gggaaggaactctatgagaagaaggatgtggagatggacaggctcctgaaccagattgat
ggttacctcaagaggcgactgaagactcacgtacccatgcttcaggtttggacggcagag
aagccacacccacaagaggagtacctggactgcctgtgggctcagatccagaagctgaag
aaggaccgctggcaggagcgccacatcctgcggccctacatcgcctttgacagcgtgctg
tgcgaggccctgcagcacaacctgccgcccttcaccccgcccgcccacacgcccgactgc
cagtaccccgtgccgcgcgtcgtgttccgcgtgttcgactacaccgatgccccagagggc
cctgtaatgccaggaagccactctgtggagaggttcgtgattgaggaaaacctccacaac
atcattaagtcccattggaaagagaggaagacctgtgctgcacagttactcagctatcct
ggaaaaaacaagatcccactgaactaccacatagtggaggtcatctttggagagctcttc
cagctgccctgccccccccacatcgacgtcatgtacaccacgctgctcatcgagctgtgt
aagctgcagccgggctccctgcctcaagttttggcacaagccacagagatgatgtacatg
agactggacaccatgaacactacttgtatagacagactcctcaactggttctcccaccat
ctgagcaactttcagttccgatggagctgggatgactgggcggactgtttggcaatggat
gctgacaagcccaagcccaagtttgtcaaggaagtcctggagaaatgcatgaggctgtcc
tatcatcaacggatcgtggacatcgtcccacccactttctcagccctcatcccagccgaa
cccatattcttttacaaataccaagacgaggccaacagtgcgctcccaggctacgctgta
gcaataacggtgggcaacgccatcaagaaccgggcctccaacgaggagattctcaccgtg
cttaaggacgtgcctaaccccaaccaggaagatgacgatgatgagggtgagggcttcaac
cccctgaagatagaggttttcctgcagaccctcctccacctggcagccaagtccttcagc
cactccttcagcgccctggccaagttccatgagatcctgaaggccctgacggactgtgac
gagggcaagctgcacatcctccgggtggtgtatgaggtgtggaggaaccacccccagatg
atctctgtgctggtggacaagttgatccggacacagattgtggactgtgctgctgtagcc
aactggctcttctcccctaacatggctcatgaattcaccaggttttacgtgtgggagatt
ttgcactccaccatccgtaagatgaacaaacacgttcagaagatccagaaggagctggag
gaggccaaggaaaagctggagaagcagcagcataagaagcagaaggacagcggtgatgaa
gaggacatggagagaaacagtgaggatgaggacggtcagctggaggagcaaattgaacgt
ctgcaggagaaggtggagtcagcccagagtgagcagaagaacctgttcctggtcatcttc
cagcgcttcatcatgatgctgacggagcatctggttcgctgcgagacgggcagcgtggac
tttaacacgccctggtacaagaactgcatcgagaggctccagcagatcttcctcatgcac
cacgtgaccatccagcagtatgtgggcaccttggagaatcttctgttcactgctgagctc
gaccatcacatcctggctgtgtaccagcagttttgtgcccttcagctctga
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