Escherichia marmotae: C1192_21480
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Entry
C1192_21480 CDS
T05353
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
ema
Escherichia marmotae
Pathway
ema03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ema00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
C1192_21480
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ema03400
]
C1192_21480
Enzymes [BR:
ema01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
C1192_21480
DNA repair and recombination proteins [BR:
ema03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
C1192_21480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecD_N
AAA_19
AAA_30
Helicase_RecD
UvrD_C_2
SH3_13
Viral_helicase1
AAA_11
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
nSTAND3
T2SSE
MukB
PhoH
AAA_28
DEAD
UvrD_C
CbiA
FtsK_SpoIIIE
Bcl-2
SRP54
TrwB_AAD_bind
NTPase_1
AAA
ATPase
Motif
Other DBs
NCBI-ProteinID:
AUT29393
LinkDB
All DBs
Position
4215102..4216928
Genome browser
AA seq
608 aa
AA seq
DB search
MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSYDAGEGHVCLPLSRLEN
NEASHPLLATCVSEIGELQNWEECLLASHAVSRGDEPTPMILCGDRLYLNRMWCNERTVA
RFFNEVNHAIEVDEALLAQTLDQLFPVSDDINWQKVAAAVALTRRISVISGGPGTGKTTT
VAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTL
HRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQ
LASVEAGAVLGDICAYANAGFTAERAEQLSHLTGSYVPAGCGTEAASLRDSLCLLQKSYR
FGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKRILQSGEDYIAMLEEALAGYGRYLD
LLQARAEPDLIIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGR
PVMIARNDSALGLFNGDIGIALDRGQGTRVWFAMPDGNIKSVQPSRLPEHETTWAMTVHK
SQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGL
AALFSSRG
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgaaattgcaaaagcaattactggaagctgtggagcacaaacagctacgcccgctggac
gtgcagtttgccctgaccgtggcgggtgatgaacatcccgccgtcacccttgcggcggca
ctgttaagttatgatgccggggaaggacatgtctgtttgccgctttcacggctggagaac
aacgaagcctcgcacccgctcctggcgacctgcgtcagtgaaatcggtgagctacaaaac
tgggaagagtgtctgctggcttcacatgcggtcagccggggagatgaacctacaccaatg
atcctttgtggcgatcgtctctatctcaaccgcatgtggtgtaacgagcgcacggtggcg
cgctttttcaatgaagtgaatcatgccattgaggttgatgaagctctactggcgcaaacc
ctggaccaactttttccagtaagcgatgacattaactggcaaaaagtggcggcagcggtg
gcgctgacgaggcggatctcggtgatttccggtggccccggcaccggtaaaacgaccacc
gtggcgaagttgctggcagcgttaattcagatggccgacggtgaacgttgtcgcatccgt
ttggctgcgccgacggggaaagccgccgcgcgcttaaccgaatcacttggcaaagctttg
cgccagttaccgctgacggatgaacaaaagaaacgtattccggaagatgccagcactctg
caccgcttgctgggcgcgcagccgggcagtcagcgtttacgccatcatgcgggtaaccca
ttgcatcttgatgtgttggtggtcgatgaagcgtcaatgatcgatctgcccatgatgtca
cgattgatcgacgcattgcccgatcatgccagagtgatctttcttggcgaccgtgatcaa
ctggcctctgttgaggctggggctgttcttggcgatatttgcgcttatgccaatgcgggc
tttaccgcagaacgagcggagcagctaagtcacctgacggggagctacgttcctgcgggc
tgtggcacagaggcggcatctttgcgcgatagtctctgccttttgcaaaaaagttaccgt
ttcggcagcgattctggcattggtcagctcgcggcggctatcaatcgcggcgataaaacg
gcagtgaaaaccgtttttcagcaggattttactgacatcgaaaaacggattttacagagt
ggcgaagattatattgcgatgcttgaggaagctcttgcgggttacggacgctatctggat
ctgctgcaagcgcgtgccgagccggatttaattattcaggcattcaatgaataccagctt
ttgtgcgccctgcgggaagggccgtttggcgtagccgggctgaatgagcgaattgagcag
tttatgcaacagaagcgcaaaatccatcgccatccgcactcgcgttggtacgaaggcagg
ccggtgatgattgcccgcaatgacagcgcccttgggttgtttaatggtgatattggtatt
gcactggatcgcgggcaaggaacgcgcgtctggtttgcaatgccggacggtaatatcaag
tcagtgcaaccaagtcgtttaccggaacacgaaaccacgtgggcgatgacggtacataaa
tcgcaggggtctgagttcgaccatgcggcgttgattttgccgagccagcgcacgccggtc
gtgacgcgagagctggtttacaccgcagtgacccgtgcgcgtcgccgtttatcgttgtat
gccgatgagcgcatattaagtgcggcaatcgccacacgtaccgagcggcgtagcggactg
gcagcgttatttagttcgcggggataa
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