Eublepharis macularius (Leopard gecko): 129342008
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Entry
129342008 CDS
T09084
Symbol
SETX
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
emc
Eublepharis macularius (Leopard gecko)
Brite
KEGG Orthology (KO) [BR:
emc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
emc03021
]
129342008 (SETX)
Enzymes [BR:
emc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
129342008 (SETX)
5.6.2.5 RNA 5'-3' helicase
129342008 (SETX)
Transcription machinery [BR:
emc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
129342008 (SETX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
UvrD-helicase
Viral_helicase1
AAA_16
AAA_22
DEAD
ResIII
DUF4164
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
129342008
NCBI-ProteinID:
XP_054853383
UniProt:
A0AA97LEU3
LinkDB
All DBs
Position
14:complement(63059946..63154499)
Genome browser
AA seq
2603 aa
AA seq
DB search
MSTCCWCTPGGVNASRLLQSYASEELSSSELTGANDDLCYCVECVDEYHKARDKVPSLQK
ILWKLETSRLVDHLEKTMQKRNELPDLYIIEGDKATPCCAYTSSDLERDLSIPLLEILKH
PYLLLSERLSELFVEALFEVEKINYSYEVTGKHPGIYLLVVHPNEHIRRWAIRTATNLGE
VDRDDYYDIQEVFTCLFKVIELGLFENPHIYNSAVSEEGKLILLPPHLYDTGDHKSYWLG
ICMLLTVLEEQAMDSLLLGPEKQNDFMQSILSTMEKHTDDDKQDPFWPALQCFMVILNRL
GSKVWGQLIDPVQAFQTIVNSPSYKNKIKRIRQSCRRTKTEPLSDYENEMITSSQIVYNY
YTEKPQKETGWKTVWSDCFRNLHEDMQALASMLQSDSDQEEHWHSNTFLWFIPFVHSLMD
LKSVGVPYIMEVIRYLCSEINEVFREAVQYCDKVSESFILILVSVVQLHFAKECLHLLWV
SSQAWVEAVVKCAKLPSAAIVRSSEGTAWNFPRAAGAISSQGHCSVQLICMKLIRSLLKE
AYQQGQQASCKFFLDKLNLLLRNNNVSQGWQLSAEDTSELQVCLKKFIKSINSKQLTPSS
HGGNATASISSTLSSLKQEKESWDERYPVTTSCEQTAGLPLRRDESCQEGPSPKRVVHLG
EEHRDGSCRDQTLCKTSECLVSNIKQEPDERSVLEGGKLGCSNLANGHKNAQNKEYCCQD
LGNQRESDSSYKNYFNQGFQDPETKDRDGKEVKSKSSKCLPVPEKDHDGRSGGSGSEVKT
GQNNMLNVKVVLEKLSFTSKLKQFIESNKTGTATSEPEAEKQQCLKDGSRHQEEQTSGIM
ATSLSNVHKQELSLGDASEDKELYPKKISKDGLAECRGSSQAEDDLKESSSDDENIPYSK
IRKKLRKNKSAVAAIPSADSQIDRDLSRLSLAAYAKGINFPVDSGQASAVREQSCIQRKV
GGAFRSCSGGQSNQSSSDTDEPCNQVIIISDSSSDEDKNKVNVTREREREKRGTSLQKQF
SCELESARGQELTRTSSSPLPYEDYDSQCFEFETEDDMYSVWQEYQEDENAAGHPEEQDL
SKNPKSSHSPCDLETGRQTNDRDYDTDYLGEEAIERAAEAFEQQVILKRKDSKAEATPDE
ETAVTSGRTKHFAEMQANDGGCSRHDGPPLLSPSASITAHEKSNKRPRKSSTKSQLLKTA
NKKAEKGNASLNAHNRKSPQIKSSRSAPAVVPPKKIHNYPQPRSTVEKLGLKKAPRQAAE
LSQRSLDSLAELRSYGKAAGELDVPQQRKSKLIPPQSLVHKNRKMLACQDLQFYRQSRPK
LEERVGRTHGRNSETQPKKLVKKADAKQSVPQGASGVTDAIQKERAECFNNTSDRERKQH
SLERKEVQPPPVSAVKNELPSQPTNFDTNVAAAVTTFPGNLGSVVAGGTKMDLVVSSFSF
SSPCDEAVSKETESKLNKDSGEDNDLFLTQRAPEDMEICSQMENGIIVEERPLQGHYLNT
DTCKHAGCVEKVSQAGAYCIKHAVAVPLDHVFAKPLAPKPPTAKIFSSSSSRSANLTKDL
EHIHKPSLTPKSKPTFKMDDIKRLSFMSILGPRNSNSDLQNVPSNHIAEAATIRLTSGIR
AGQKMHPPFPQGNHFNTQKRDHSIFNKEVLKWNYDMFARFSQFGVPESLLQSIVAAVPVR
FQGYNDYFDTFFPLTMLNAFETVAQEWQENQKLKVQKEFLLKLLNLSADSNGADFTADIQ
ERDLEIQAHPKESDLVFLKVSRRQNPYSEEGGMEIVHVGLVTHFSQPSVREATEKKEQRV
ACRLSIQTQGSLAFINKEVRCVVVSSLVTTQRRFKALLLLSRSPLSSSIYNGSYANFSPE
GLNVDSENAISDMAEYNEDQKRAIETAYTMVSSPLRPQICLIHGPPGTGKSKTIIGLLFR
ILAERSGKENPMHSLNAKIKRNRVLVCAPSNAAVDDLMKKIILFFKEKCQDKGNPLGNCG
DINLVRLGQEKSISKEVRKFSLNDQIKYRMNRGKLGNDQDLHRRKEELDQRLDMLSRQRA
MERKETEKKQQLDEEICKLSRERERLAHQLKEVRGWPQEMKTNIILESHIICCTLSTSGG
VLLESAFRKQSYNSLSCIIVDEAGQACEVETLIPFIHGCRKLVLVGDPKQLPPTVISVKA
QDYGYDQSLMGRLCRHLEEQVQQNGIRELPVLQLTTQYRMHPDICLFPSNYIYGRSLKTD
RLTEENRCSSKWPFQSYLLFDVRDGQELRESDSFANPQEVKLVIELMKVIKHKKKQIGFH
NIGIITPYNAQKRRILRELDKTFGENRASEVDTVDGFQGREKDCIIVTCVRANSTQGSIG
FLKSLQRLNVTITRAKYSLFILGQLKTLMDNKDWNELIQDAQRRGTIVKTSHDSYKKDAT
KILKLMPMPQRTRSLPGGAMPERTPQGPAGTVSNEQKEVSSHKDSNSWQHSVNTCTSAEV
SHRFLGLPGSHISSQKPPLSHQMKSAQERPQDPRLARRAQAEQACMDNRNPAPSGSGVAL
PRGLDAPPGQRNCSNNIRPVACKTEAPGKPVATTETKRLGRGDQHNQPEWKKGQDCVSRG
KKASEDALESGSLVAAKKRRTTY
NT seq
7812 nt
NT seq
+upstream
nt +downstream
nt
atgagtacgtgttgttggtgtacccctggtggtgtcaatgccagccgtttgctacaaagt
tatgcttctgaggagttgtcctccagtgaacttacaggagccaacgatgacctctgctac
tgcgtggagtgtgtggatgagtaccacaaagcaagggataaggtgccatcacttcaaaag
atcctgtggaagttggaaacttctcgccttgttgaccacttggagaaaacaatgcagaag
agaaatgaacttcctgatctatatatcatagaaggggacaaggccacaccttgctgtgct
tacaccagttctgacttggagagagacctcagtatccctttgctcgaaatattgaaacac
ccgtatctgctgctcagtgagcgtctgagtgagctgtttgttgaggctctcttcgaagtg
gagaaaatcaactacagctatgaggttactggtaaacatccagggatttatctgcttgtg
gttcaccctaatgaacatatccgtcggtgggccatccgaacagccacgaatctgggggag
gtggacagggatgactactacgacatacaggaagtgttcacctgcttgttcaaagtgatc
gagttgggcttgtttgaaaatcctcatatttataactccgcggtgtcagaggagggaaaa
ctcatcctgttgcccccccatctctatgataccggtgaccacaaaagctactggctaggc
atctgtatgctgctaacggtgttggaagaacaagctatggattcgttgttacttggtcca
gaaaaacagaatgacttcatgcaatccatattgtccacaatggagaaacacacagatgat
gacaagcaggatcctttctggccagcgctgcagtgtttcatggtgatcttgaatcggctg
gggtccaaagtgtggggtcagctgattgatcccgtccaggcatttcaaaccatcgtcaac
agtccaagttacaagaataaaatcaaacgcattcgccagagttgcaggaggactaaaact
gagccattgtctgactatgaaaatgagatgattacttccagccagattgtgtataactac
tacacagaaaagccccaaaaggaaactggatggaaaactgtttggtcagattgcttccgc
aacttgcatgaggatatgcaagctttggccagcatgcttcagtctgacagtgaccaagaa
gagcattggcacagcaacacatttctgtggttcatcccttttgttcattctcttatggat
ttgaaaagcgtaggagttccctacatcatggaggtcatccgctatctgtgttcagaaatc
aacgaggtcttccgtgaagctgtccagtattgcgacaaagtatctgaaagcttcattctg
atactggtgtcggtagttcagctccattttgcaaaagagtgcctgcacttgctgtgggtc
agctcgcaagcctgggtggaggcagtggtgaaatgcgctaaacttccaagtgcagcaatt
gtgcgcagcagtgaggggactgcctggaacttcccaagagctgcaggggcaatctcatct
cagggccattgctccgtgcagctcatctgcatgaagctgatacgtagcctcctaaaggaa
gcttaccagcaagggcagcaagccagttgcaagttcttccttgacaagctcaatttactt
ctgcgcaacaataatgtctctcagggctggcagttgagcgccgaggacacgagtgaattg
caagtgtgtctaaagaagttcattaaaagtatcaacagcaaacagttaactccttcctcc
catggaggaaatgccactgctagtatttcttcaactctttcttcactaaagcaagaaaaa
gaatcatgggatgagagatatccagtgactacatcctgtgagcagactgctggtctacca
ttaaggagggatgaaagctgccaagaaggcccatctcccaagagagtggttcatttgggg
gaggagcacagggatggctcttgtagagaccaaactctgtgtaagacctcagaatgcctt
gtgtccaatataaaacaagagccagacgagaggtcagtactggaaggtggtaagctgggc
tgctccaacttagcaaatggacacaagaatgcccagaacaaagaatactgttgccaagac
ctgggaaatcagagggagagtgattcttcgtacaaaaattactttaaccaaggtttccag
gacccagagaccaaagatagggatggaaaggaggtaaagtctaaaagttctaaatgcttg
cctgttccggaaaaagatcacgatggtaggagtggcggcagtggttcagaggtaaaaaca
ggtcagaataacatgttaaatgtcaaagttgtactggagaaactcagctttacctccaaa
ttaaagcagtttattgaaagtaataagacaggaacggccacatctgaaccagaggcagag
aagcagcagtgtctcaaagatgggagcagacatcaggaagagcagacaagcggaattatg
gccactagcttgtcaaatgtgcacaaacaagagttgagtttaggtgatgcttctgaagac
aaggaactctacccaaaaaagatctccaaagacgggctggcagaatgtagaggttcctcc
caagcagaggatgatttgaaagagagtagcagtgatgatgaaaacattccatattcaaaa
attaggaagaagctgaggaaaaataaatcggctgttgcagccatcccgtcggcagattct
cagattgatagagacctcagtagactgtccctagcagcgtatgccaaaggaatcaatttc
cctgttgattcgggccaagcaagtgctgtacgtgagcagagctgcattcaaaggaaagtc
ggtggtgcttttaggtcctgttctggcgggcagagcaaccagtcgtcctctgatactgat
gaaccctgcaatcaagtcataattatttctgattcttcttcagatgaggataaaaacaaa
gtgaatgtgacaagagagcgagagagagagaaaagaggcacaagtcttcaaaagcaattc
agttgtgagcttgaaagtgccagaggccaagagctaaccagaacctccagttcccctctg
ccatacgaagactatgattcacagtgctttgaatttgaaactgaggatgacatgtactca
gtctggcaagagtaccaggaggatgagaatgcggcaggccaccccgaggaacaagacctt
tcaaaaaaccccaaaagcagccattcaccatgtgatttggaaactggaagacaaaccaat
gaccgagattatgatactgactaccttggggaagaggccattgaaagagcagcagaggct
tttgagcaacaggtaatcttgaagaggaaagatagtaaagctgaagcaacacctgatgaa
gaaacagctgttaccagtgggaggacaaagcatttcgcagagatgcaggctaacgacgga
ggatgttccaggcatgacggtccacctttgctcagtccttcagcatcaataactgcccat
gaaaaatcaaataaaaggccacggaaaagttcaacaaaatcccagctgcttaaaacagct
aataagaaagctgagaaaggaaatgccagtctaaatgctcacaaccgaaaatcaccacaa
atcaaatcttccaggtctgcccctgctgtggtcccaccaaaaaaaattcacaattatcct
cagccaagatcaaccgtggaaaaacttggcctgaagaaagcaccccgccaggcagctgaa
ctctcccagcgttcgctagacagtcttgctgagctgcgcagctacggcaaagctgcgggg
gagttggatgtcccgcagcaaagaaagtcaaaattaattccacctcagagtttggttcat
aaaaacaggaaaatgttagcctgccaagatctacagttctaccggcagtcaagacccaaa
ctggaggagagagttggacgtactcatggaagaaattctgagactcaacccaaaaaacta
gtcaagaaggcagatgcaaagcagagtgtcccacagggtgcaagtggagttactgatgca
attcagaaagagagagctgagtgcttcaataacacctcagacagagaaaggaaacaacat
tcactagaaagaaaggaggtccagccaccacctgtctctgcagtgaagaatgaattgccc
agccagccgaccaattttgatacgaatgttgcagcagctgttactactttcccaggtaat
ttaggttctgttgtagctgggggtactaaaatggacctcgtggtctcctcattttccttc
tctagcccttgtgatgaagcagtttcaaaagagacagaatctaaattaaacaaggacagt
ggagaggataatgaccttttcttaacacagagagcgccggaggatatggagatatgttct
caaatggagaatggcataattgtggaagaaagacccttgcaaggtcactacttaaacact
gacacatgcaagcacgccgggtgtgttgaaaaggttagtcaagcaggagcatactgcata
aagcatgctgttgctgttccgctggaccatgtctttgccaagccccttgcccccaaacct
ccaacagcaaagatttttagctccagctcttctaggagcgccaacctcaccaaggacctg
gaacacattcacaaaccctcactgactccaaagagcaaacctacgtttaagatggacgat
atcaagcgcctctcatttatgagcattcttgggcctcggaattcaaacagcgacctccag
aatgtgccaagtaaccatattgcagaagctgctacgattcggctcacctcagggattcgt
gctgggcaaaagatgcacccacccttcccacaaggaaaccattttaacacccagaagaga
gaccacagcattttcaacaaagaggtcctaaagtggaactatgacatgtttgcaagattc
agccagtttggggtgccagaaagcctccttcagtcaatcgtggccgctgttccagtcaga
tttcagggttacaatgactactttgatacattcttccccttaacgatgctgaatgctttt
gaaacggtggcacaagagtggcaagagaatcagaaattgaaagtgcagaaggaatttctc
ctgaaattattgaacctcagtgcggactcaaacggagcagatttcacagctgacattcag
gaaagggatctggaaattcaggcgcatcccaaggaaagtgacttggtcttcttaaaggtg
tccagaagacaaaacccctatagcgaagaaggtgggatggagatcgtgcacgttggcctg
gtgacccatttttcccagccatcagtccgtgaagccacagagaaaaaagaacagcgagtt
gcctgtcgcttgtctattcagacccaagggagtttggccttcatcaataaggaagtcaga
tgtgtggtagtgagctctctagtgacaacacagcgaaggttcaaggcattacttctgctc
agccgaagccctctgtcctcgtctatctacaacggaagttatgccaacttctctccagag
ggcttgaacgtggactccgagaatgctatttctgacatggctgaatacaatgaagatcaa
aagagagccattgagacagcttacaccatggtgtcatcaccactgcgtcctcaaatttgc
ctgatccacggaccgcctggaacagggaagtccaaaactatcattggacttctgttccgc
atcctggccgagagatcggggaaggagaatcccatgcacagcctgaatgccaagattaag
cggaaccgtgtgctggtttgtgcaccatccaatgctgctgtcgacgatttgatgaaaaaa
ataattcttttcttcaaagaaaaatgccaggacaaaggaaatcctttaggaaactgtggt
gatatcaacttggtgaggctggggcaagaaaagtcaatcagcaaagaggtccgaaagttc
agcttgaatgaccaaatcaagtaccggatgaatagagggaagctcggcaatgaccaggat
ctccaccgaaggaaggaagaactggaccagaggctggacatgctttctcgccagcgtgcg
atggagagaaaggagaccgagaagaaacaacaattagatgaggagatctgcaaactttca
agggagagagagcggcttgctcatcaactgaaagaggtccggggatggcctcaggagatg
aaaacgaacataatcctggagtctcacatcatctgctgtaccctcagcacaagtggtggg
gtgctgctagaatcggctttccggaagcagtcctataactcgctcagctgcatcattgtg
gatgaggcaggacaggcttgtgaggttgaaactctcattccgttcattcatggctgccga
aagcttgtcctggttggcgaccccaagcagctccctcctactgtgatatctgtgaaagct
caggattacggttatgaccagtctctgatgggtcggctgtgcagacacctggaggagcaa
gtgcagcagaacgggatcagggaactcccggtcctgcagctgaccacacagtataggatg
cacccagacatctgcctcttcccctccaattatatctatggccgctccctgaaaactgac
aggctaacagaagaaaatcgatgctcttcaaaatggccattccagtcatatttgttgttt
gatgtgcgagatggccaggagctacgggagagtgattcctttgcaaatccccaggaagtc
aagctggtgatcgaattaatgaaggtgattaagcacaaaaagaagcaaattggcttccac
aacattggaatcatcaccccatacaatgcacaaaaaaggagaatcctgagagagttggat
aaaacctttggggaaaacagagctagcgaagtggacaccgtggatgggttccagggccgt
gagaaagactgcatcattgtgacctgcgtccgagcaaacagcacccaaggatccatcggg
tttttaaaaagtctccagcgcctgaacgtcacaattacacgagccaagtacagcctcttc
atccttggacaactgaaaacgctcatggacaacaaagactggaatgagctgattcaggat
gctcagaggcggggcacgattgtcaagaccagccatgacagctacaaaaaagatgccaca
aaaatcctgaagctcatgcctatgccccagaggactcgttccttgcccggtggtgccatg
ccagagagaactccacaagggccagcaggcacagttagcaatgagcagaaagaagtctcc
agccacaaagacagcaattcttggcaacactcagtcaacacttgcacttcagcagaagtt
agccatcggttcctgggtctccctgggtctcacatctcctcccagaaaccacccctctct
caccagatgaagtctgcccaagagaggccacaggacccacggctggctcgaagggcacag
gcagagcaggcttgcatggacaatagaaatcctgcaccgagtggttcaggggtggcattg
ccacggggccttgatgctcctccagggcagagaaattgtagcaataacatacggccagta
gcctgtaagacagaagcgcccgggaaacctgtcgccaccacagagacaaagagactgggc
agaggggaccagcataaccagccagagtggaagaaaggccaggactgcgtctccaggggc
aaaaaggcttccgaagatgccctggagagcggaagtctagtggctgccaagaagcgaagg
accacctactag
DBGET
integrated database retrieval system
