Enterobacter cloacae subsp. dissolvens SDM: A3UG_00645
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Entry
A3UG_00645 CDS
T02159
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
enl
Enterobacter cloacae subsp. dissolvens SDM
Pathway
enl03030
DNA replication
enl03410
Base excision repair
enl03420
Nucleotide excision repair
enl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
enl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A3UG_00645 (ligB)
03410 Base excision repair
A3UG_00645 (ligB)
03420 Nucleotide excision repair
A3UG_00645 (ligB)
03430 Mismatch repair
A3UG_00645 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
enl03032
]
A3UG_00645 (ligB)
03400 DNA repair and recombination proteins [BR:
enl03400
]
A3UG_00645 (ligB)
Enzymes [BR:
enl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A3UG_00645 (ligB)
DNA replication proteins [BR:
enl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A3UG_00645 (ligB)
DNA repair and recombination proteins [BR:
enl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A3UG_00645 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A3UG_00645 (ligB)
MMR (mismatch excision repair)
DNA ligase
A3UG_00645 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A3UG_00645 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
DUF3701
Motif
Other DBs
NCBI-ProteinID:
AFM57882
LinkDB
All DBs
Position
129977..131653
Genome browser
AA seq
558 aa
AA seq
DB search
MWRWISGFMLLWSGYGTAVCPVWSQAKAETEIATLSAQIKRWDDAYWQQGISEVNDEVYD
QLNGRLKQWQHCFGHESSDAAIPALTGTIKHPVAHTGVHKVASKEELRQWMHTRRNLWMQ
PKVDGVAVTLVYRGGTLAQAISRGDGLKGEDWTSQVRLIPSVPQHLSGALANSVLQGELF
WQRENHIQQQMGGMNARAKVAGAMMRQQDNAFLREVGVFIWAWPDGTKEMKTALAELSDA
GFTLTARYTLPVEHIEAVEKQRSAWHTAALPFATDGIVVRSADELPGENWLPGEGSWVVA
WKYLPVAQVAEVRDIQFSVGRTGKIAVVAALEPVRLDDKQVQRVSLGSVGRWQRLDIAPG
DQIQVSLAGQGIPRFDKVVWRGTDRQKPEPPVPQYHFLSCFYASPECMEQFFARLTWLSS
KQGLDIAGLGESGWRTLWQAHRFEHIFSWLLLTQAQLQTTPGLSAARGLALWHQFNLVRE
RPFIRWIMAMGVPLAQATLKAAGELSWQTMRQRSALDWQTLPGTGEEKARQIVNWLHVPE
VDVLAKWLTEQHIKGFGN
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgatggataagcggattcatgctgttgtggagcggttatggtacggcggtgtgt
ccggtgtggtctcaggcaaaagcggaaacagagattgcgacgctaagcgcgcaaatcaaa
cgctgggatgacgcctactggcagcagggtatcagcgaagtgaacgatgaggtgtatgac
cagctcaacgggcggttaaagcagtggcagcactgttttggacatgaatcatcagacgca
gcgatccccgcccttactggaactatcaaacaccctgtcgcccatacgggggttcataaa
gtagccagtaaagaggagcttcgccagtggatgcatacccggcgtaatctctggatgcag
cccaaagttgacggcgttgcggtaacgctggtgtatcggggtggaacgttggctcaggcc
attagccgtggcgatgggttaaaaggtgaagactggacatcgcaggtgcgtttaataccg
tcggtgccacaacacctttccggcgcgctggcgaacagcgtgttacagggggagcttttt
tggcagcgtgaaaaccacattcagcagcagatgggcggaatgaatgcacgcgcaaaagtc
gcaggtgcgatgatgcgccagcaggataacgcgtttttgagagaggttggggtattcatc
tgggcctggccagacgggacaaaagagatgaaaaccgcactggcggaactctctgacgcg
ggttttaccctgacggcgcgctataccttgcccgtagagcatattgaggccgtcgaaaag
cagcgctcagcgtggcacaccgcagcattaccctttgccacggacggcattgtggttcgc
tcggcggatgaactgccgggtgaaaactggctgcctggagagggcagttgggtagtggca
tggaaatatcttcctgtcgcgcaggttgctgaagtgcgggatattcagttcagtgtgggc
cgaacggggaagattgccgttgtggcggcgctggagccagtacggctggatgataaacag
gtgcagcgggttagcctgggatccgttggccgctggcaaaggctggatatcgcgccgggc
gatcagatccaggtcagtctggccgggcaggggatcccccgattcgacaaagtcgtctgg
cgagggactgaccggcaaaaaccagaacctccagtcccgcagtaccattttctcagctgt
ttttacgcttcaccggaatgtatggagcagttctttgcccggttgacgtggctcagttca
aaacaggggctggatattgccggtttaggcgagtccggctggcgaacgctctggcaggcg
catcgctttgaacatattttctcatggctgttgttaacccaggcgcagctgcaaaccacg
ccggggttgtctgctgcacgcggactggcgctctggcatcagtttaatctggtgcgcgag
cggccttttattcgttggatcatggcgatgggtgttccgctggctcaggcgaccctgaaa
gccgccggcgagctatcatggcagaccatgcgccagcgtagtgctctggactggcagacc
ttgccgggaacgggagaggagaaagcgcggcaaatcgttaactggctgcacgtgccggag
gtggatgtgctggcaaagtggctgactgaacagcacatcaagggattcggaaattaa
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