Endosymbiont of unidentified scaly snail isolate Monju: EBS_1004
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Entry
EBS_1004 CDS
T04530
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
enm
Endosymbiont of unidentified scaly snail isolate Monju
Pathway
enm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
enm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EBS_1004 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
enm03019
]
EBS_1004 (rnr)
03016 Transfer RNA biogenesis [BR:
enm03016
]
EBS_1004 (rnr)
Enzymes [BR:
enm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EBS_1004 (rnr)
Messenger RNA biogenesis [BR:
enm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EBS_1004 (rnr)
Transfer RNA biogenesis [BR:
enm03016
]
Prokaryotic type
tRNA degradation factors
EBS_1004 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
HTH_12
RNase_II_C_S1
Rv2175c_wHTH
Motif
Other DBs
NCBI-ProteinID:
BAN68935
UniProt:
S6CFS1
LinkDB
All DBs
Position
1114434..1117034
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AA seq
866 aa
AA seq
DB search
MSRRNKPRRQRAKDPNFAREAQKYENPIPSREFIMATIDELGCPLSFDELAEALGLLEEE
QLEALSRRLRAMIRDGQLIRNRRGGYCQVNHADMIPGRVIGHPDGFGFLKPDDGGDDLFL
VPREMRKVWHGDRVVAQVSGTDRRGRKEGVVIEVLERAFSRLVGRLHVEKGVAFVLPDNK
RIPQQILVPPDQLGDAADGQVVVVAIDEHPTEWRQPIGHIVEVLGDHMAPGMETDVAIRS
HDIPVEWPADVLEQIADLGEEVPEAAKQGRVDLRKTPLVTIDGEDARDFDDAVYCQPTPK
GWRLLVAIADVSAYVQPDSPLDREAYNRATSVYFPDRVVSMLPEVLSNGLCSINPHVDRL
CMVAEMYFDAKGKMYRSRFFEGVMNSHARLTYDQVRDMLEHGDPELCERFAHVLPHLRDL
HALYKVLHAAREQRGAIDFDSVETKFRFGDNGKVAEVIPLERHDAHRMIEEYMLAANVAA
ARHLLRKRMPAMFRNHEPPSEEKLEDLQQFLAELGLRLGGMPHPSAKDHAELLEQAKDRP
DYHLIQTVLLRSMMQAVYAAENKGHFGLALEAYTHFTSPIRRYPDLMVHRAIRHLLTGSK
PAEFSYSHAHLQTMAEHCSANERRADEASRDSADALKCEFMLDKVGQVFEELIVSVNSFG
LFVELADIYVTGLVHITALDRDYFHFDPIGHRLTGERSGKVYRLGDRIRVQVAAVNMDER
KIDFVLADGRGREDEGARRGGRRRGRDRDREKRRAEPARDTSSSRKEAATPAKEDPSASK
ERAVAGDVWRPAVPGWGRPGGGNGEASGNGAGQTRKGGKKASRKASARKTAKKAAHKKTA
KKVGKKAAKKAAGQRHPARRRSKSRS
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
gtgagtagaagaaacaagccgcgccgacagcgcgccaaggacccgaatttcgcgcgtgag
gcgcagaaatacgaaaatcccatccccagccgtgagttcatcatggcgaccatcgacgag
ctgggttgccccctctcgttcgatgaactggccgaggcgctcggtctgctggaggaagag
cagctcgaggccctttcccgtcgtttgcgcgccatgatccgcgatggccagctgatccgg
aaccgccgcggtggctattgtcaggtgaaccatgccgacatgatccccgggcgggtgatc
ggacaccccgacggctttggctttctcaagcccgacgatggtggcgacgacctgttcctg
gtgccgcgggagatgcgcaaggtctggcacggcgaccgtgtggtcgcccaggtctcgggt
accgaccggcgcgggcgcaaggaaggggttgtcatcgaggtgctcgagcgcgccttctcc
aggctggtcggccgcttgcatgtagagaagggggtggccttcgtgctgccggacaacaag
cgcatcccgcagcagatcctggtgccgcccgatcagcttggcgatgcagcggacgggcag
gtggtcgtcgtggccatcgacgagcatcccaccgagtggcgccaacccatcggccacatc
gtcgaggtgctgggcgaccacatggcgccgggcatggagaccgatgtcgccatccgttcc
cacgacatcccggtcgagtggccggccgatgtactcgagcagatcgccgatctcggcgag
gaggtgcccgaagcggccaagcagggccgggtggacctgcgcaagacgccgctggtgacc
atcgacggcgaggacgcgcgcgacttcgacgacgcggtgtactgtcagcccacgcccaag
ggctggcgcctgctggtggccattgccgatgtttcggcctatgtgcagcccgacagcccg
ctcgaccgcgaggcctacaaccgagccacttcggtgtacttccccgaccgggtggtgtcc
atgttgcccgaggtgctgtccaacggtctgtgctcgatcaacccgcatgtcgaccgcctg
tgcatggtggccgagatgtacttcgacgccaagggcaagatgtaccgttcgcgcttcttc
gagggcgtgatgaattcgcatgcgcggctcacctatgaccaggtgcgcgacatgcttgaa
cacggcgatcccgaattgtgtgaacgcttcgcgcatgtgttgccgcatctgcgtgacctg
catgccctctacaaggtgctgcatgcggcgcgcgagcagcgtggcgccatcgatttcgac
tcggtcgagaccaagttccgtttcggcgacaacggcaaggtggccgaggtgatcccgctg
gagcgtcacgatgcccatcgcatgatcgaggagtacatgctggcggccaacgtggcggcg
gcgcggcacctgttgcgcaagaggatgccggcgatgttccgcaaccacgagccgcccagc
gaggagaagctcgaggacctgcaacagttcctggcggagcttggcctgcgtcttggcggc
atgcctcatccctccgccaaggatcatgccgagctgctcgagcaggcgaaggaccggccc
gactaccacctgatccagactgtgctgctgcgctcgatgatgcaggcggtctacgccgcc
gagaacaagggccacttcggcttggcgctcgaggcctacacgcacttcacctcgccgatc
cggcgctatcccgacctcatggtgcaccgggccatccgccacttgctcacgggcagcaag
ccggccgagttcagctacagccacgcgcatttgcagaccatggccgagcactgttccgcc
aacgagcgccgtgccgacgaggcctcgcgcgactcggccgatgcgctcaaatgcgagttc
atgctcgacaaggtcgggcaggtgttcgaggagctgatcgtcagcgtcaacagcttcggg
ctgttcgtcgagctggccgacatctatgtcaccggcctggtgcacatcaccgcgctggac
cgcgactacttccacttcgatcccatcggccaccgcctgaccggcgagcgcagcggcaag
gtctatcgcctgggcgatcggattcgcgtgcaagtggctgcggtaaacatggacgagcgc
aagatcgacttcgtgctcgccgatggtcgcgggcgggaggatgagggagcgcggcgaggc
ggtcgccgtcgcggtcgggatcgcgaccgggaaaagcgcagggccgagccggcacgtgat
acgtcgtcctcgcgcaaggaagcggccacgcccgccaaggaagacccgtccgccagcaaa
gagcgtgctgtcgcgggcgatgtctggcgtccggcggtgccgggctggggccgcccgggg
gggggcaatggagaggccagcggcaatggggccggccagaccaggaagggtggaaagaag
gcgagcaggaaggcgtcggccagaaagacagccaagaaggctgcccacaagaagacggcc
aagaaggtcggcaagaaggccgcaaagaaggcggccggccagcgtcacccggcacgccga
cggagcaagtcacgctcgtga
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