KEGG   ENZYME: 4.1.1.39Help
Entry
EC 4.1.1.39                 Enzyme                                 

Name
ribulose-bisphosphate carboxylase;
D-ribulose 1,5-diphosphate carboxylase;
D-ribulose-1,5-bisphosphate carboxylase;
RuBP carboxylase;
carboxydismutase;
diphosphoribulose carboxylase;
ribulose 1,5-bisphosphate carboxylase;
ribulose 1,5-bisphosphate carboxylase/oxygenase;
ribulose 1,5-diphosphate carboxylase;
ribulose 1,5-diphosphate carboxylase/oxygenase;
ribulose bisphosphate carboxylase/oxygenase;
ribulose diphosphate carboxylase;
ribulose diphosphate carboxylase/oxygenase;
rubisco;
3-phospho-D-glycerate carboxy-lyase (dimerizing)
Class
Lyases;
Carbon-carbon lyases;
Carboxy-lyases
BRITE hierarchy
Sysname
3-phospho-D-glycerate carboxy-lyase (dimerizing; D-ribulose-1,5-bisphosphate-forming)
Reaction(IUBMB)
2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O [RN:R00024]
Reaction(KEGG)
R00024;
(other) R03140
Show
Substrate
3-phospho-D-glycerate [CPD:C00197];
H+ [CPD:C00080]
Product
D-ribulose 1,5-bisphosphate [CPD:C01182];
CO2 [CPD:C00011];
H2O [CPD:C00001]
Comment
Will utilize O2 instead of CO2, forming 3-phospho-D-glycerate and 2-phosphoglycolate.
History
EC 4.1.1.39 created 1965, modified 2001, modified 2003
Pathway
ec00630  Glyoxylate and dicarboxylate metabolism
ec00710  Carbon fixation in photosynthetic organisms
ec01100  Metabolic pathways
ec01110  Biosynthesis of secondary metabolites
ec01120  Microbial metabolism in diverse environments
ec01130  Biosynthesis of antibiotics
Orthology
K01601  ribulose-bisphosphate carboxylase large chain
K01602  ribulose-bisphosphate carboxylase small chain
Genes
ATH: AT1G67090(RBCS1A) AT5G38410(RBCS3B) AT5G38420(RBCS2B) AT5G38430(RBCS1B) ArthCp030(rbcL)
ALY: ARALYDRAFT_475563 ARALYDRAFT_475602 ARALYDRAFT_475805 ARALYDRAFT_494136 ARALYDRAFT_494137 ARALYDRAFT_675829 B9J21_pgp057(rbcL)
CRB: 17878197 17878658 17879562 17895103 25194288(rbcL)
CSAT: 104701308 104719509 104719510 104724195 104724198 104724199 104733000 104733001 104733002 104750505 104787713 109132455 26971514(rbcL)
EUS: ASK66_gp059(rbcL) EUTSA_v10010325mg EUTSA_v10019199mg EUTSA_v10019202mg EUTSA_v10027955mg
BRP: 103850112(rbcS) 103852368 103852369 103852372(rbcS) 103863779(rbcS) 103864160(rbcS)
BNA: 106352647 106352649 106365777 106376497 106376498 106379349 106381060 106391848 106391858 106391883 106429430 106429432 106429433 106444894 106444895 106446351 111203371 11542073(rbcL)
BOE: 106296431 106322045 106325660 106325710 106341726 106341727 106341944 106342891
THJ: 104800009 104803942 104805566 104821932 32981798(rbcL)
CPAP: 110809039 110814144 110824084 110824180 110826094 5878390(rbcL)
GMX: 100500504(RBCS-1) 100527679 100794277(RBCS-4) 100810275 3989271(rbcL) 547605
LJA: Lj0g3v0054319.1(Lj0g3v0054319.1) Lj0g3v0207869.1(Lj0g3v0207869.1) Lj1g3v3316260.1(Lj1g3v3316260.1) Lj1g3v3316260.2(Lj1g3v3316260.2) Lj1g3v3317360.1(Lj1g3v3317360.1) Lj1g3v3317360.2(Lj1g3v3317360.2) Lj1g3v4435400.1(Lj1g3v4435400.1) Lj1g3v4435400.2(Lj1g3v4435400.2) Lj2g3v0179290.1(Lj2g3v0179290.1) Lj4g3v1330570.1(Lj4g3v1330570.1) Lj4g3v2120370.1(Lj4g3v2120370.1) Ljclg3v0000040.1(Ljchlorog3v0000040.1) Ljmtg3v0000680.1(Ljmitog3v0000680.1)
CSV: 101219300(RBCS) 3429289(rbcL)
MCHA: 111018606
SLY: 101257875 101268337(Rbcs-3B) 108449891(rbcS3A) 3950460(rbcL) 543973(rbcS1) 543974(LESS_5)
SOT: 102577450 102580042 102600888(rbcS2c) 102601229(RBCS-2B) 102605737(RBCS-C) 4099985(rbcL)
DOSA: Os01t0791033-00(Os01g0791033) Os01t0899425-00(Os01g0899425) Os02t0152400-01(Os02g0152400) Os05t0427800-00(Os05g0427800) Os10t0356000-00(Os10g0356000) Os12t0207600-00(Os12g0207600) Os12t0274700-01(Os12g0274700) Os12t0291100-01(Os12g0291100) Os12t0291200-00(Os12g0291200) Os12t0291400-01(Os12g0291400) Os12t0292400-01(Os12g0292400)
ATS: 109754280(LOC109754280) 109754281(LOC109754281) 109754299(LOC109754299) 109754300(LOC109754300) 109754312(LOC109754312) 109756851(LOC109756851) 109763713(LOC109763713)
SBI: 4549167(rbcL) 8070647
ZMA: 100279574 542212(ssu1) 845212(rbcL)
MIS: MICPUN_104784(RBCS) MICPUN_104787(RBCS.1) MICPUN_96260(RBCL)
APRO: CP73_p049(rbcL) F751_5580
CME: CymeCp013(rbcL) CymeCp014(rbcS)
GSL: Gasu_40760 JL72_p053(rbcL) JL72_p054(rbcS)
CCP: CHC_950(rbcL) CHC_955(rbcS)
AAF: AuanCp071(rbcL) AuanCp072(rbcS)
PPF: Pput_1846
PPI: YSA_08807
TMC: LMI_0615
MCA: MCA2743(cbbL) MCA2744(cbbS)
MEJ: Q7A_522(rbcL) Q7A_523
TNI: TVNIR_2991(cbbS_[H]) TVNIR_2992(cbbL_[H])
TVR: TVD_09480 TVD_09485(rbcL)
CSA: Csal_3215
HEL: HELO_1481
TBN: TBH_C1651
RMA: Rmag_0701
VOK: COSY_0653(cbbM)
EBH: BSEPE_1058(rbcL)
REH: H16_B1394(cbbS2) H16_B1395(cbbL2) PHG426(cbbSp) PHG427(cbbLp)
RME: Rmet_1500(cbbS) Rmet_1501(cbbL)
CTI: RALTA_B1701(cbbS) RALTA_B1702(cbbL)
BXB: DR64_4780(cbxSC) DR64_4781(cbbL1) DR64_5776
BFN: OI25_6152
PPNO: DA70_10980
PPNM: LV28_20070
PPUL: RO07_13870
BBR: BB1035
AXX: ERS451415_04183(rlp2)
AMIM: MIM_c08190 MIM_c14370(cbxS) MIM_c14380(cbbL)
ODI: ODI_R0401
RFR: Rfer_1391
PNA: Pnap_1978
DAC: Daci_5642
LIH: L63ED372_00506(cbbL) L63ED372_00507(cbbS1)
HYR: BSY239_776 BSY239_777(cbxSC)
MPT: Mpe_A1478(cbbL) Mpe_A1479(cbbS) Mpe_A2782(cbbL) Mpe_A2783(cbbS)
LCH: Lcho_3767
THI: THI_0135(rbcL) THI_0136(cbbS) THI_2041(cbbM)
RGE: RGE_36050(cbbS) RGE_36060(cbbL)
PBH: AAW51_5056(rbcL) AAW51_5057(rbcS)
NEU: NE1920(cbbS) NE1921(cbbL)
SHD: SUTH_00757(cbbM)
METR: BSY238_1872(cbbL1) BSY238_1873(cbxSC)
TBD: Tbd_2623(cbbS) Tbd_2624(cbbL) Tbd_2638(cbbM)
GCA: Galf_0034
SDR: SCD_n02031(cbbL) SCD_n02032(cbbS) SCD_n02850(cbbM)
DAR: Daro_3637
AZA: AZKH_p0230(cbbS_rbcS) AZKH_p0231(cbbL_rbcL)
DHY: DESAM_22949(cbbM)
DAS: Daes_2544
PPRF: DPRO_1575(cbbM)
MLO: mll7006
SME: SM_b20197(cbbS) SM_b20198(rbcL) SM_b20393(rbcL)
SMX: SM11_pD1220(rbcL) SM11_pD1412(cbbL) SM11_pD1413(cbbS)
SMEL: SM2011_b20197(cbbS) SM2011_b20198(cbbL) SM2011_b20393(rbcL)
RHI: NGR_b22000(rbcL1) NGR_c06470(rbcL2)
SFH: SFHH103_05031(rbcL) SFHH103_05883(cbbL) SFHH103_05884(cbbS)
EAD: OV14_a1403(rbcL2) OV14_b0206(rbcL1)
ARA: Arad_9230(rbcL)
RET: RHE_PF00042(rbcL)
REC: RHECIAT_PC0000964(rbcL)
RLE: pRL120396(cbbl1)
RLG: Rleg_4762
RHL: LPU83_pLPU83c0539(rbcL)
RHT: NT26_0669(cbbS) NT26_0670(cbbL)
BJA: blr2585(rbcL) blr2586(cbbS)
BRA: BRADO1659(cbbL) BRADO1660(cbbS) BRADO2274(cbbL) BRADO2275(cbbS)
BBT: BBta_0451(cbbL) BBta_0452(cbbS) BBta_2641(cbbL) BBta_2642(cbbS) BBta_6396(cbbS) BBta_6397(cbbL)
BRS: S23_53960(cbbS) S23_53970(cbbL)
BRO: BRAD285_5741(cbbS) BRAD285_5742(cbbL)
RPA: RPA0262(rlp2) RPA1559(cbbL) RPA1560(cbbS) RPA2169(rlp1) RPA4641(cbbM)
BOS: BSY19_991
AZC: AZC_2687
MET: M446_1732
MMED: Mame_01572(mtnW) Mame_04753(rlp2)
HDI: HDIA_3858(cbxSC) HDIA_3859(cbbL)
RSP: RSP_1281(cbbS) RSP_1282(cbbL) RSP_3271(rbpL)
RCP: RCAP_rcc00578(cbbS) RCAP_rcc00579(cbbL) RCAP_rcc01829(cbbM)
JAN: Jann_3063(rbcL)
RSU: NHU_01392 NHU_03441(rbcL) NHU_03442(cbbS)
LVS: LOKVESSMR4R_01065(rbcL)
SPHI: TS85_22735
AMV: ACMV_08240(rbcL) ACMV_10880(cbbS) ACMV_10890(cbbL)
RCE: RC1_0239(cbbL2) RC1_0240(ccbS2) RC1_4061(cbbL1) RC1_4062(cbbS1)
MAG: amb2696
MGY: MGMSRv2__0815(cbbM)
MAGX: XM1_3514(cbbM)
MAGN: WV31_05775
ALI: AZOLI_p10723(cbbS) AZOLI_p10724(cbbL)
MAGQ: MGMAQ_3160(cbbM) MGMAQ_3264(cbbL) MGMAQ_3265(cbbS)
PGV: SL003B_0987(cbbS) SL003B_0988(rbcL)
AFR: AFE_1690(cbbS-2) AFE_1691(cbbL-2) AFE_2155(cbbL2) AFE_3051(cbbL-1) AFE_3052(cbbS-1)
PMW: B2K_21690
CSQ: CSCA_0270
SAY: TPY_0781(rbcS) TPY_0782(rbcL)
ADG: Adeg_1863
TACI: TDSAC_0401
VPR: Vpar_1263
VRM: 44547418_01345(mtnW)
PUF: UFO1_2836
NNO: NONO_c39820(rbcS) NONO_c39830(rbcL)
NSR: NS506_04565(rbcL) NS506_04566(rbcS)
GOR: KTR9_2562
AAU: AAur_1905
ACH: Achl_1739
MPH: MLP_19640
PSEE: FRP1_03410 FRP1_03415(rbcL)
SYN: slr0009(rbcL) slr0012(rbcS)
SYZ: MYO_122490(rbcL) MYO_122510(rbcS)
SYY: SYNGTS_2225(rbcL) SYNGTS_2227(rbcS)
SYT: SYNGTI_2224(rbcL) SYNGTI_2226(rbcS)
SYS: SYNPCCN_2223(rbcL) SYNPCCN_2225(rbcS)
SYQ: SYNPCCP_2223(rbcL) SYNPCCP_2225(rbcS)
SYJ: D082_33200(rbcL) D082_33220(rbcS)
SYW: SYNW1717(rbcS) SYNW1718(rbcL)
SYC: syc0129_c(rbcS) syc0130_c(rbcL)
SYG: sync_1966(cbbS) sync_1967(cbbL)
SYR: SynRCC307_0819(rbcL) SynRCC307_0820(rbcS)
SYX: SynWH7803_0678(rbcL) SynWH7803_0679(rbcS)
CYA: CYA_1194(cbbL) CYA_1196(cbbS)
CYB: CYB_2577(cbbS) CYB_2579(cbbL)
SYNR: KR49_12850(rbcL) KR49_12855
SYND: KR52_13195 KR52_13200(rbcL)
SYH: Syncc8109_1954(rbcS) Syncc8109_1955(rbcL)
SYNW: SynWH8103_01969(rbcS) SynWH8103_01970(rbcL)
TEL: tll1504(rbcS) tll1506(rbcL)
THN: NK55_04160(rbcS) NK55_04170(rbcL)
CYI: CBM981_0866(cbbL) CBM981_0867(cbbS)
HHG: XM38_011320(rbcL) XM38_011340(rbcS)
PMA: Pro_0551(rbcL) Pro_0552(rbcS)
PMM: PMM0550(rbcL) PMM0551(rbcS)
PMB: A9601_06061(rbcL) A9601_06071(rbcS)
PMC: P9515_06141(rbcL) P9515_06151(rbcS)
PMF: P9303_08081(rbcL) P9303_08091(rbcS)
PMG: P9301_05761(rbcL) P9301_05771(rbcS)
PMH: P9215_06311(rbcL) P9215_06321(rbcS)
PMJ: P9211_05521(rbcL) P9211_05531(rbcS)
PME: NATL1_06041(rbcL) NATL1_06051(rbcS)
AMR: AM1_1783(rbcS) AM1_1785(rbcL)
MAR: MAE_47870(rbcS) MAE_47890(rbcL)
CYL: AA637_07875(rbcS) AA637_07885(rbcL)
CHON: NIES4102_28340(rbcL) NIES4102_28360(rbcS)
CYT: cce_3164(rbcS) cce_3166(rbcL)
ARP: NIES39_K02830(rbcS) NIES39_K02850(rbcL)
GVI: gvip295(rbcL) gvip297(rbcS)
GLJ: GKIL_0667(rbcS) GKIL_0669(rbcL)
ANA: alr1524(rbcL) alr1526(rbcS)
NON: NOS3756_17100(rbcL) NOS3756_17120(rbcS)
ANB: ANA_C11337(rbcL) ANA_C11339(rbcS)
CALH: IJ00_07475 IJ00_07485(rbcL)
STAN: STA3757_22870(rbcL) STA3757_22890(rbcS)
TRO: trd_0132
CAP: CLDAP_27010(mtnW)
MRB: Mrub_0902
MIN: Minf_1263(rbcS) Minf_1264(rbcL)
PLM: Plim_1373
IPA: Isop_2634
RMR: Rmar_1894
PHE: Phep_2747
DFE: Dfer_2138
CTE: CT1772(rbcL)
CPC: Cpar_0434
CCH: Cag_1640
CLI: Clim_1970
PVI: Cvib_0464
PLT: Plut_0412
PPH: Ppha_2334
PAA: Paes_1801
CTS: Ctha_1707
TLE: Tlet_1684
NDE: NIDE1881(rlp)
NMV: NITMOv2_0456(rlp)
NJA: NSJP_2757
LFC: LFE_2466
MOX: DAMO_2165(cbbL) DAMO_2166(cbbS)
MJA: MJ_1235
MAC: MA_4555(rbcL)
MBAR: MSBR2_2288
MBAK: MSBR3_2349
MMA: MM_1249
MMAC: MSMAC_0063
METM: MSMTP_0091
MTHE: MSTHC_1654
MTHR: MSTHT_1635
MHOR: MSHOH_0075
MBU: Mbur_2322
MMET: MCMEM_1180
MMH: Mmah_0928
MPY: Mpsy_0328
MTP: Mthe_1616
MCJ: MCON_3086(cbbM)
MHI: Mhar_2262
MHU: Mhun_2315
MLA: Mlab_0558
MBG: BN140_2166(rbcL)
MEMA: MMAB1_2868(rbcL)
MPI: Mpet_1902
MBN: Mboo_1105
MPL: Mpal_0258
MPD: MCP_1116(rbcL)
MEZ: Mtc_1074(rbcL)
RCI: RCIX222(rbcL)
AFU: AF_1638
FPL: Ferp_1506
GAC: GACE_0158
GAH: GAH_00737
HALH: HTSR_1161(rbcL)
HHSR: HSR6_1196(rbcL)
HSU: HLASF_1219(rbcL)
HSF: HLASA_1207(rbcL)
NPH: NP_2770A(rbcL)
HMU: Hmuk_2766
HVO: HVO_0970(rbcL)
HME: HFX_0967(rbcL)
SRUB: C2R22_02660(rbcL)
NMG: Nmag_0732
NAT: NJ7G_0819
MEAR: Mpt1_c12750(rbcL)
MARC: AR505_1642
PHO: PH0939(PH0939)
PAB: PAB1580
PFU: PF1156
PFI: PFC_05005(rbcL)
PYN: PNA2_1620
PYS: Py04_1155
TKO: TK2290
TON: TON_1234
TGA: TGAM_1751(rbcL)
TSI: TSIB_1596
THE: GQS_09490(rbcL)
THA: TAM4_1764
THM: CL1_1487
TLT: OCC_12446
THS: TES1_0685
TNU: BD01_1640
TEU: TEU_00235
THH: CDI07_06755(rbcL)
PPAC: PAP_06885
ABI: Aboo_1084
SMR: Smar_1051
DKA: DKAM_1140
TAG: Tagg_0906
IAG: Igag_1625
HBU: Hbut_0503
TPE: Tpen_1227
BARC: AOA65_0861(rbcL)
LOKI: Lokiarch_30170(rbcL)
 » show all
Taxonomy
Reference
1  [PMID:4331471]
  Authors
Bowes G, Ogren WL, Hageman RH.
  Title
Phosphoglycolate production catalyzed by ribulose diphosphate carboxylase.
  Journal
Biochem. Biophys. Res. Commun. 45 (1971) 716-22.
Reference
2  [PMID:4310607]
  Authors
Wishnick M, Lane MD, Scrutton MC, Mildvan AS.
  Title
The presence of tightly bound copper in ribulose diphosphate carboxylase from spinach.
  Journal
J. Biol. Chem. 244 (1969) 5761-3.
Other DBs
ExplorEnz - The Enzyme Database: 4.1.1.39
IUBMB Enzyme Nomenclature: 4.1.1.39
ExPASy - ENZYME nomenclature database: 4.1.1.39
BRENDA, the Enzyme Database: 4.1.1.39
CAS: 9027-23-0
LinkDB All DBs

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